PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT03804
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 284aa    MW: 32422.2 Da    PI: 6.9493
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT03804genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding452.4e-141663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W+++Ed++l+d++ ++G  +W++++   g++R +k+c++rw +yl
         OIT03804 16 KGLWSPDEDQKLKDYIIKYGHVCWSSVPINAGLKRNGKSCRLRWINYL 63
                     678*****************99**********9*************97 PP
2Myb_DNA-binding50.25.7e-1669114148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++ eE+e ++ ++ + G++ W++Ia++++ gRt++++k++w++yl
         OIT03804  69 RGAFSIEEEETILTLHGMIGNK-WSRIAHHLP-GRTDNEIKNHWHSYL 114
                      899*******************.*********.************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    
MRCKPAVDKP KHKHKKGLWS PDEDQKLKDY IIKYGHVCWS SVPINAGLKR NGKSCRLRWI  60
NYLRPGLKRG AFSIEEEETI LTLHGMIGNK WSRIAHHLPG RTDNEIKNHW HSYLKKRVDK  120
IAESEGQSQN IDGVSSSSSS SSSSLKLASR NSSLNSFVQT EGSLADTDQD VSPVDFLNEP  180
RKSKFRKVLF AEWFSLDQFN GQDFQNSDLS KNNLCYNSSE FQDAFMMSKG AYENDINIQG  240
INNETVDNDM YQAQLKFEDQ FSTNGFEELL SGDFNINGDI MYIL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52260.17e-60MYB family protein