PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT03784
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 382aa    MW: 43109.1 Da    PI: 7.9352
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT03784genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26090.32.4e-2831128196
    DUF260   1 aCaaCkvlrrkCakd.CvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 
               aCa+Ck++r+kC ++ Cv+ ++fpa+++ +f  vhk+FG snv+k +k+l++   +++a++s ++eA+ +++dPv+G +g ++kl+qql++lk+e   
  OIT03784  31 ACASCKHQRKKCIEGeCVMWRHFPATKMDEFLGVHKVFGISNVTKKIKSLDDVAeQDEAIKSFFWEARLWQEDPVHGPLGEYKKLEQQLKELKEEKRN 128
               7***********9866**********************************766549*************************************98765 PP

Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    
MPDNKNNNAE AGAAAVDAVE SHEAVGSNRL ACASCKHQRK KCIEGECVMW RHFPATKMDE  60
FLGVHKVFGI SNVTKKIKSL DDVAEQDEAI KSFFWEARLW QEDPVHGPLG EYKKLEQQLK  120
ELKEEKRNKE LQIVQFPDVP RPPTPLEIRY MDQMVARRQI STISTLSDQE DYLLNSTAPN  180
YSTLLQGHGA FPSHYNNPIE QRQLNSLIPR QVFQGVQFQQ CPNRTLQAEG RGISHLATYN  240
GHCQLHQQRC SYNNVDLGQG ITRGRRRRKE CSDHQLVSPS CSGRHVRGRG IGPVSTGAII  300
SSCSSASFAD QWTDNANKTM LRDSTGGRHC EVPIPLPSEV QHIAHGSNRR ADDFQHHFTN  360
NLPRESSQSD LESRDDSTSK RF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1265270RRRRKE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06280.11e-17LBD family protein