PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT03784

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 382aa MW: 43109.1 Da PI: 7.9352

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT03784	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	90.3	2.4e-28	31	128	1	96
DUF260 1 aCaaCkvlrrkCakd.CvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 aCa+Ck++r+kC ++ Cv+ ++fpa+++ +f vhk+FG snv+k +k+l++ +++a++s ++eA+ +++dPv+G +g ++kl+qql++lk+e OIT03784 31 ACASCKHQRKKCIEGeCVMWRHFPATKMDEFLGVHKVFGISNVTKKIKSLDDVAeQDEAIKSFFWEARLWQEDPVHGPLGEYKKLEQQLKELKEEKRN 128 7*********9866******************************766549***********************************98765 PP

Sequence ? help Back to Top
Protein Sequence Length: 382 aa Download sequence
MPDNKNNNAE AGAAAVDAVE SHEAVGSNRL ACASCKHQRK KCIEGECVMW RHFPATKMDE 60 FLGVHKVFGI SNVTKKIKSL DDVAEQDEAI KSFFWEARLW QEDPVHGPLG EYKKLEQQLK 120 ELKEEKRNKE LQIVQFPDVP RPPTPLEIRY MDQMVARRQI STISTLSDQE DYLLNSTAPN 180 YSTLLQGHGA FPSHYNNPIE QRQLNSLIPR QVFQGVQFQQ CPNRTLQAEG RGISHLATYN 240 GHCQLHQQRC SYNNVDLGQG ITRGRRRRKE CSDHQLVSPS CSGRHVRGRG IGPVSTGAII 300 SSCSSASFAD QWTDNANKTM LRDSTGGRHC EVPIPLPSEV QHIAHGSNRR ADDFQHHFTN 360 NLPRESSQSD LESRDDSTSK RF

Sequence ? help Back to Top

Protein Sequence Length: 382 aa Download sequence

MPDNKNNNAE AGAAAVDAVE SHEAVGSNRL ACASCKHQRK KCIEGECVMW RHFPATKMDE  60
FLGVHKVFGI SNVTKKIKSL DDVAEQDEAI KSFFWEARLW QEDPVHGPLG EYKKLEQQLK  120
ELKEEKRNKE LQIVQFPDVP RPPTPLEIRY MDQMVARRQI STISTLSDQE DYLLNSTAPN  180
YSTLLQGHGA FPSHYNNPIE QRQLNSLIPR QVFQGVQFQQ CPNRTLQAEG RGISHLATYN  240
GHCQLHQQRC SYNNVDLGQG ITRGRRRRKE CSDHQLVSPS CSGRHVRGRG IGPVSTGAII  300
SSCSSASFAD QWTDNANKTM LRDSTGGRHC EVPIPLPSEV QHIAHGSNRR ADDFQHHFTN  360
NLPRESSQSD LESRDDSTSK RF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	265	270	RRRRKE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06280.1	1e-17	LBD family protein

Link Out ? help Back to Top
Ensembl	OIT03784