PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT03618
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 310aa    MW: 34741 Da    PI: 8.1536
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT03618genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH47.82.3e-15232257126
               --S---SGGGGTS--TTTTT-SS-SS CS
   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
               +ktelC+ +++tG C+yG++C+FaHg
  OIT03618 232 FKTELCNKWQETGACPYGNNCQFAHG 257
               79***********************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    
MQREISTTAG HGGAYNYNTP SSPPSFLSQP NAFNLTSLYS SILFPQNQNS QSLIDQHYHE  60
DLMDRHNRVL SQLLEAEKKT LALRQENINL KMANFNLNNQ LSLLLKASSS DYGPGLGLDS  120
VVDGIRRMRI GVGEEETSSD GHSWEDLVAD RHLSPTSVMD SGRSEGVDRV LLPKSISVRS  180
NGYLKAIHAA GGSRPQTSIK SVHTAQKVYV KGGGNKKEEQ PLELEVYNQG MFKTELCNKW  240
QETGACPYGN NCQFAHGIEE LRPILRHPRY KTEVCRMVLN GDPCPYGHRC HFRHTLTDQE  300
KLMRSLNTRS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.13e-63C3H family protein