PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT03487

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

SBP

Protein Properties

Length: 354aa MW: 39447.6 Da PI: 8.2219

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT03487	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	130.2	7.3e-41	149	225	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 CqvegC+ dl++akeyhrrh++Ce+hsk+ +v+v+g+e+rfCqqCsrfhelsefD++krsCrr+L++hn+rrr++q+ OIT03487 149 CQVEGCNLDLTSAKEYHRRHRICEAHSKSRMVIVAGMERRFCQQCSRFHELSEFDDNKRSCRRKLSDHNARRRRSQP 225 **************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence
MDWNLKSHQL EWGWDNNISI CSCSGLEFCR HAETFINEKE VNKAENIKHI YSLDGVSSYS 60 LDHGSSVKSS AEESNYGIVG SVPGFVSVER KEKYSTSGTC TRPGGSSIGL NLYPANNETV 120 TSNCPVLPLS STTAKRCRGS YHLMQNPYCQ VEGCNLDLTS AKEYHRRHRI CEAHSKSRMV 180 IVAGMERRFC QQCSRFHELS EFDDNKRSCR RKLSDHNARR RRSQPEANHS SSTDRQSRTS 240 GSLCGSSSST SNSMGKSSFR PKNIQGLNTS TSDYKLDVAS NLPRRAHSLL SRNSFGLDDP 300 THTSMEQLIM PASVGESQPF VPSVTPNWQQ VSSEHFPADH QVPFYSPHCF NGSA

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence

MDWNLKSHQL EWGWDNNISI CSCSGLEFCR HAETFINEKE VNKAENIKHI YSLDGVSSYS  60
LDHGSSVKSS AEESNYGIVG SVPGFVSVER KEKYSTSGTC TRPGGSSIGL NLYPANNETV  120
TSNCPVLPLS STTAKRCRGS YHLMQNPYCQ VEGCNLDLTS AKEYHRRHRI CEAHSKSRMV  180
IVAGMERRFC QQCSRFHELS EFDDNKRSCR RKLSDHNARR RRSQPEANHS SSTDRQSRTS  240
GSLCGSSSST SNSMGKSSFR PKNIQGLNTS TSDYKLDVAS NLPRRAHSLL SRNSFGLDDP  300
THTSMEQLIM PASVGESQPF VPSVTPNWQQ VSSEHFPADH QVPFYSPHCF NGSA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	210	222	RRKLSDHNARRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43270.1	1e-39	SBP family protein

Link Out ? help Back to Top
Ensembl	OIT03487