PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT03395

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

ARF

Protein Properties

Length: 1103aa MW: 122175 Da PI: 6.4795

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT03395	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	62.7	6.1e-20	132	232	1	98
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+k+lt sd++++g +++p++ ae++ +++++ ++l+ +d++ ++W++++ yr++++r++lt+GW+ v+ ++L +gD+v+F +d++++f ++ OIT03395 132 FCKTLTASDTSTHGGFSVPRRAAEKIfppldySLQPPA-QELVARDLHDNVWTFRHVYRGQPKRHLLTTGWSLVVSGKRLFAGDSVLFIRDEKHQF--QLG 229 99***************************9777766.49**********************************************6655555..888 PP EE- CS B3 96 vfr 98 +++ OIT03395 230 IRK 232 776 PP
2	Auxin_resp	119.5	2.7e-39	258	341	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+v+YnPra++seFv++++k+ ka++ ++vs+GmRf+m+fete+s +rr++Gt++g+sd+dpvrW+nS+Wr+L+ OIT03395 258 AAHAAANNSPFTVFYNPRAGPSEFVIPLAKYYKATYsSQVSLGMRFRMMFETEESGTRRYMGTITGISDMDPVRWKNSQWRNLQ 341 79*****************************99879******************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1103 aa Download sequence
MKTPANGAGA GTQQASGNED EKKRINPELW QACAGPLVNL PVAGTHVVYF PQGHSEQVAA 60 SIKKDVEAQV PNYPNLPSKL ICLLHNVTLH ADPETDEVYA QMTLQPVPSF DKEALLRSDL 120 SMKVNKPQPE FFCKTLTASD TSTHGGFSVP RRAAEKIFPP LDYSLQPPAQ ELVARDLHDN 180 VWTFRHVYRG QPKRHLLTTG WSLVVSGKRL FAGDSVLFIR DEKHQFQLGI RKANRQPTNL 240 SSSVLSSDSM HIGILAAAAH AAANNSPFTV FYNPRAGPSE FVIPLAKYYK ATYSSQVSLG 300 MRFRMMFETE ESGTRRYMGT ITGISDMDPV RWKNSQWRNL QVGWDESTAG ERINRVSIWE 360 IEPITAPFLI CSSPFFSSKR PRQPGMPDGD CSDMDGVFRR TMPWLGDDFG MTDPQGLPGL 420 SLVQWMNMQK NPSLTNPMMS NYLNSLSGSV LQNLAGADLS RQLGLPAPQL QQQHNLQFHR 480 PNQQGQQLDQ LQKLPAATLN SLDSIMQSQQ QLYDIGQQPR QNSTNQSLPT TQVQAQLMQA 540 QSLVQSQSVL PPQQSIQNQQ QRNLPQSLPQ QQPQQQILSQ SQQQNFMSSQ PPDPVNQHHF 600 SENQAQFQLL QKLHQQQKSL LAQQSALQQS SHLGSIQDQQ KQFLDVSQNF SRSLATSQML 660 DASQTTSTST SLSHSQVVQQ QMTRTNSQSN LRFVQPTQQP KLQQQQQSGI LPDLSGPVGY 720 SLPRTTCQLT TNGSSLTRTA GGGQPVMDEV PSWSTSVSTN NCQNVVHQNL NGRIHESTGV 780 RDETTHYSGP LLNSSGLEVM SANSNLVKEL QQKTDVKPSI NVSKNQNHGF LAPQTLNTAG 840 HQLDYLDSSS SATSACLSQN DVHLQQTTDP PLSSSSQPLI FRDSPDGEVQ GDSRNDIAFG 900 ANMENQLGMP MMPDPLITKS LMGSRKDFSD NLSSGGGMLS SYENPKEVQP ELLASMASEY 960 MTFNSIDSTI NDGNFMDRGA WDPPSQLPRM RTYTKVYKRG AVGRSIDIGR YSGYEELKLD 1020 LARRFGIEGQ LEDRQRIGWK LVYVDHENDV LLVGDDPWEE FVSCVRCIKI LSPQEVQQMS 1080 LDGDFGGNVL QNQACSSSDA GGV

Sequence ? help Back to Top

Protein Sequence Length: 1103 aa Download sequence

MKTPANGAGA GTQQASGNED EKKRINPELW QACAGPLVNL PVAGTHVVYF PQGHSEQVAA  60
SIKKDVEAQV PNYPNLPSKL ICLLHNVTLH ADPETDEVYA QMTLQPVPSF DKEALLRSDL  120
SMKVNKPQPE FFCKTLTASD TSTHGGFSVP RRAAEKIFPP LDYSLQPPAQ ELVARDLHDN  180
VWTFRHVYRG QPKRHLLTTG WSLVVSGKRL FAGDSVLFIR DEKHQFQLGI RKANRQPTNL  240
SSSVLSSDSM HIGILAAAAH AAANNSPFTV FYNPRAGPSE FVIPLAKYYK ATYSSQVSLG  300
MRFRMMFETE ESGTRRYMGT ITGISDMDPV RWKNSQWRNL QVGWDESTAG ERINRVSIWE  360
IEPITAPFLI CSSPFFSSKR PRQPGMPDGD CSDMDGVFRR TMPWLGDDFG MTDPQGLPGL  420
SLVQWMNMQK NPSLTNPMMS NYLNSLSGSV LQNLAGADLS RQLGLPAPQL QQQHNLQFHR  480
PNQQGQQLDQ LQKLPAATLN SLDSIMQSQQ QLYDIGQQPR QNSTNQSLPT TQVQAQLMQA  540
QSLVQSQSVL PPQQSIQNQQ QRNLPQSLPQ QQPQQQILSQ SQQQNFMSSQ PPDPVNQHHF  600
SENQAQFQLL QKLHQQQKSL LAQQSALQQS SHLGSIQDQQ KQFLDVSQNF SRSLATSQML  660
DASQTTSTST SLSHSQVVQQ QMTRTNSQSN LRFVQPTQQP KLQQQQQSGI LPDLSGPVGY  720
SLPRTTCQLT TNGSSLTRTA GGGQPVMDEV PSWSTSVSTN NCQNVVHQNL NGRIHESTGV  780
RDETTHYSGP LLNSSGLEVM SANSNLVKEL QQKTDVKPSI NVSKNQNHGF LAPQTLNTAG  840
HQLDYLDSSS SATSACLSQN DVHLQQTTDP PLSSSSQPLI FRDSPDGEVQ GDSRNDIAFG  900
ANMENQLGMP MMPDPLITKS LMGSRKDFSD NLSSGGGMLS SYENPKEVQP ELLASMASEY  960
MTFNSIDSTI NDGNFMDRGA WDPPSQLPRM RTYTKVYKRG AVGRSIDIGR YSGYEELKLD  1020
LARRFGIEGQ LEDRQRIGWK LVYVDHENDV LLVGDDPWEE FVSCVRCIKI LSPQEVQQMS  1080
LDGDFGGNVL QNQACSSSDA GGV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19220.1	0.0	ARF family protein

Link Out ? help Back to Top
Ensembl	OIT03395