PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT03393
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 331aa    MW: 37726.8 Da    PI: 7.9833
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT03393genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH277.7e-0988112126
               --S---SGGGGTS--TTTTT-SS-SS CS
   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
               +kt+ C  f++ GtC+ G+ C+FaHg
  OIT03393  88 FKTRMCAKFLE-GTCRNGEHCTFAHG 112
               69*********.*************9 PP
2zf-CCCH25.81.9e-08148170325
               S---SGGGGTS--TTTTT-SS-S CS
   zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
               +++C+ f+ + +C+yGd+C+F H
  OIT03393 148 MKICKKFYNGEECPYGDKCNFLH 170
               579******66************ PP
3zf-CCCH36.39.4e-12223249127
               --S---SGGGGTS--TTTTT-SS-SSS CS
   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
               +kt+ C+ +  tG+C++ drC+FaHg+
  OIT03393 223 WKTKMCSKWETTGQCPFRDRCHFAHGQ 249
               8************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    
MSYSDPPPPP PPFMPMPFAG GDIGEAWPQS PMNHEFLESH SQFDHVPPFK RLRNSDNNSP  60
NSANYTPMNS RVNQLNLIGN KGTSHIFFKT RMCAKFLEGT CRNGEHCTFA HGVEDLREPP  120
PNWQELVREK DRGVVGNWND DQKIIHRMKI CKKFYNGEEC PYGDKCNFLH ERPPKFKTDT  180
PRQRESSAIS IGTTGNRSDP ELNEISKHGI VDSDAVRMKP IYWKTKMCSK WETTGQCPFR  240
DRCHFAHGQS ELQVPSGPDL LTNPVPIMPR PFSVPLVELS SANAAVNASI QEEKEDKKIL  300
KWKLTKKIYR IYADWIDDLV PPHLLASKAE S
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.11e-69C3H family protein