PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT03178
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ARR-B
Protein Properties Length: 678aa    MW: 74759 Da    PI: 6.5171
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT03178genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like92.63.2e-29216269155
   G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
               kpr++W+ eLH++Fv+av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQkYRl
  OIT03178 216 KPRVVWSVELHQQFVQAVNQL-GIDKAVPKKILELMNVPGLTRENVASHLQKYRL 269
               79*******************.********************************8 PP
2Myb_DNA-binding43.86e-14218268148
                      TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 
                      r  W+ e+++++v+av+qlG +   +k+I + m+  g+t++++ s++qky+
         OIT03178 218 RVVWSVELHQQFVQAVNQLGIDkaVPKKILELMNvPGLTRENVASHLQKYR 268
                      678***********************************************7 PP
3Response_reg75.71.7e-25351431109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl+vdD+p+ +++l+++l++ +y ev+    +e al ll+e++  +D+++ D+ mp+mdG++ll++   e  +lp+i+++a ++++ + + +  Ga 
      OIT03178  35 VLVVDDDPTCLRILEKMLRNCHY-EVTKSNRAEIALSLLRENRngFDIVISDVHMPDMDGFKLLEHVGLEM-DLPVIMMSADDSKDVVMKGVTHGAC 129
                   89*********************.***************99999***********************6644.8************************ PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   d+l Kp+ +e+l +
      OIT03178 130 DYLIKPVRIEALKN 143
                   **********9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 678 aa     Download sequence    
MNLGVGSVVK TMSGASCSVS WKSNDNNQFP AGLRVLVVDD DPTCLRILEK MLRNCHYEVT  60
KSNRAEIALS LLRENRNGFD IVISDVHMPD MDGFKLLEHV GLEMDLPVIM MSADDSKDVV  120
MKGVTHGACD YLIKPVRIEA LKNIWQHVIR KKKHERKDKD FDQSATAEEG DRQQKPPEDL  180
DYSSSANEGG NWKSSKRRKE EEDETEERDD SSSLKKPRVV WSVELHQQFV QAVNQLGIDK  240
AVPKKILELM NVPGLTRENV ASHLQKYRLY LRRLSGVSQH PSGLNNSFMG HPEATYGMSS  300
FNGLELQALA ATGQLPAQSL ATLQAAALGR SATKGATISM PLVDQRNLFS FENPKLRFPE  360
GQQQLNNSNK QINLLHGIPT TMEPKQLADL HQSSHSPSFV AMNMQGNSRV QQNNALLMHM  420
SQQQQQPSRA QMLNETNNVS QVSRPPLSMS QQPLSSNGIP GAVLSRSGGI VANVRGPVYS  480
PVSQASPMVD FSLNQNTELQ NNSFPLVSSN SGMSTMTSKR MLQEEVNSDI KRSRGFPSGY  540
NMFDELHQQK SQDWGLSSVG STFDASHHST IPGTLDISPS MLVQQGISSM KRNGQNGISP  600
ISDAFSSREE SGNVNPMGGN LLTVKAEQLH DASYQSSFFP GQFGQDDLMS ALLKQQESVG  660
PVETEFGFDG YALDNLPV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16857.21e-161ARR-B family protein