PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT03020

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 386aa MW: 39645.8 Da PI: 6.7435

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT03020	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.6	7.9e-12	196	241	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y++ Lq OIT03020 196 HSIAERLRRERIAERMKSLQELVPNA-----NKTDKASMLDEIIDYVRFLQ 241 99*********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence
MQAMNSQMSL QEENGASSGQ NMSHSHFDPT SSHDDFLQQI LSSVPSSSPW PDLSGGGDGH 60 FDDQSIFLAS KLRQNQITSG GGAAAAAKAL MLQQQILLSR GLLAGNGDQS DDVGNPGNEI 120 SLQALYNGFA GSLGQTSNQP QHFHHAQGGS MQAQSFGAPA SSTMNQTPAA SGGSAGGGQP 180 KQQKVRARRG QATDPHSIAE RLRRERIAER MKSLQELVPN ANKTDKASML DEIIDYVRFL 240 QLQVKVLSMS RLGGAAAVAP LIADRSSEGR GGDSAQANGG GRGSNGTTSL ANNDSMTMTE 300 HQVAKLMEED MGSAMQYLQG KGLCLMPISL ATAISTATCH SMKPNNPLLH GGGGGGSAAN 360 GGGGGPSSPS LSASTVQSAT MGNGGV

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence

MQAMNSQMSL QEENGASSGQ NMSHSHFDPT SSHDDFLQQI LSSVPSSSPW PDLSGGGDGH  60
FDDQSIFLAS KLRQNQITSG GGAAAAAKAL MLQQQILLSR GLLAGNGDQS DDVGNPGNEI  120
SLQALYNGFA GSLGQTSNQP QHFHHAQGGS MQAQSFGAPA SSTMNQTPAA SGGSAGGGQP  180
KQQKVRARRG QATDPHSIAE RLRRERIAER MKSLQELVPN ANKTDKASML DEIIDYVRFL  240
QLQVKVLSMS RLGGAAAVAP LIADRSSEGR GGDSAQANGG GRGSNGTTSL ANNDSMTMTE  300
HQVAKLMEED MGSAMQYLQG KGLCLMPISL ATAISTATCH SMKPNNPLLH GGGGGGSAAN  360
GGGGGPSSPS LSASTVQSAT MGNGGV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	201	206	RLRRER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	1e-68	bHLH family protein

Link Out ? help Back to Top
Ensembl	OIT03020