PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT02882

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB_related

Protein Properties

Length: 468aa MW: 52962.1 Da PI: 7.2151

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT02882	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	31.1	5.4e-10	419	466	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 +W++ E++ l +v+++G+g+W+ I +t Rt+ ++k++w++ OIT02882 419 KWSALEEDTLRTGVQKYGSGNWTHILNTYRdifVVRTAGDLKDKWRNM 466 8******************************88*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 468 aa Download sequence
MDIDISRWIL EFILRQPLDD SILNALIHTL PLPNDNLNLK KALILRKLES EISNSSVTEK 60 ILELLELFEE LDHQEGIETL KEMKSAYCSV AVECTVKFLN EKGAESDKGK YFEAVKRIWK 120 KRINLMEKIE NVGFVCEELW DWRDEIEAAL WEDKCCDNVI RRSKGIFPVE AVKVFVREAK 180 ERIGPPFLDV VAETYRSDDT VRAFFGGVNE QGTCWDNVRE VRKGNALPRQ KHVAFRRPRG 240 ASAGTCGGVR ISDSIELGLD ASGGQDGFLP TPEIEKAQEA LKLSSKELRA MVKDPLPDAL 300 QFAETLSSLV RDHMGHQPAE NNSDRAPHPV VASSRMDQAN GENCEAQRNC HPSAASKPDL 360 MNRKSAAHTS ERDDSADVSK EGSPSGVRRF TLPSPKRTKI SPLKKYEFKN FTTRRKPTKW 420 SALEEDTLRT GVQKYGSGNW THILNTYRDI FVVRTAGDLK DKWRNMMS

Sequence ? help Back to Top

Protein Sequence Length: 468 aa Download sequence

MDIDISRWIL EFILRQPLDD SILNALIHTL PLPNDNLNLK KALILRKLES EISNSSVTEK  60
ILELLELFEE LDHQEGIETL KEMKSAYCSV AVECTVKFLN EKGAESDKGK YFEAVKRIWK  120
KRINLMEKIE NVGFVCEELW DWRDEIEAAL WEDKCCDNVI RRSKGIFPVE AVKVFVREAK  180
ERIGPPFLDV VAETYRSDDT VRAFFGGVNE QGTCWDNVRE VRKGNALPRQ KHVAFRRPRG  240
ASAGTCGGVR ISDSIELGLD ASGGQDGFLP TPEIEKAQEA LKLSSKELRA MVKDPLPDAL  300
QFAETLSSLV RDHMGHQPAE NNSDRAPHPV VASSRMDQAN GENCEAQRNC HPSAASKPDL  360
MNRKSAAHTS ERDDSADVSK EGSPSGVRRF TLPSPKRTKI SPLKKYEFKN FTTRRKPTKW  420
SALEEDTLRT GVQKYGSGNW THILNTYRDI FVVRTAGDLK DKWRNMMS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58340.2	3e-16	MYB_related family protein

Link Out ? help Back to Top
Ensembl	OIT02882