PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT02311

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C3H

Protein Properties

Length: 727aa MW: 78627.1 Da PI: 7.0449

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT02311	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.5	4.1e-07	309	329	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C++Gd C +aHg OIT02311 309 PCPEFRK-GACRRGDMCEYAHG 329 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 727 aa Download sequence
MCTGPERPNS SSSTNQSITD SKSSMKGITK LTVETEDSFS SLLELAANND IEGFKRSVVR 60 DASAIDEVGL WLVRKKGAKQ IVNEERTPLM VAATYGSLDV LKLIISNPVV DVNRACGPNK 120 CTALHCATSG GSVNAVDVVK FLLSAGADPN VEDSNGQRPV DVIVVPPKLH GARASLEELL 180 LKSSSDGSVG ECKLRVSVTT SNGSSPVLSS SPENGSPFSP SDSLCSPMAS KFSDIPANSA 240 PEKKEYPIDP SLPDIKNSIY STDEFRMFSF KVRPCSRAYS HDWTECPFVH PGENARRRDP 300 RKYHYSCVPC PEFRKGACRR GDMCEYAHGV FECWLHPAQY RTRLCKDGTS CARRVCFFAH 360 TTEELRPLYV STGSAVPSPR SAASAATVMD MAAALNLFPG SPSAHSVMSP PAFNQPMSPT 420 ANGMSHPSAP WPQPNVPALH LPGSNLQSSR LRSSLSARDI PPEDFNMLHD FDAQQLVLND 480 MACYSQPHPN SLNRSGRSNT LTPSNLEELF SAEITSSPRY SDQAAASGVF SPSHKSAFFN 540 QFQQQQSMLS PINTNVFSPK NMEHPLLQAS FGVSSPGRMS PRSMEPISPM SARLSAFAQR 600 EKQQQQLRSL SSRDLGSNNA SIVGSPVGNS WSNWGSPTGK VDWSVNGGGV GRMRRSSSFE 660 QLNNGEEPDL SWVQSLVKES PSEMKEKQAA PISGTAPSGE SLSKVDSVDH SVLGAWLEQM 720 QLDQLVA

Sequence ? help Back to Top

Protein Sequence Length: 727 aa Download sequence

MCTGPERPNS SSSTNQSITD SKSSMKGITK LTVETEDSFS SLLELAANND IEGFKRSVVR  60
DASAIDEVGL WLVRKKGAKQ IVNEERTPLM VAATYGSLDV LKLIISNPVV DVNRACGPNK  120
CTALHCATSG GSVNAVDVVK FLLSAGADPN VEDSNGQRPV DVIVVPPKLH GARASLEELL  180
LKSSSDGSVG ECKLRVSVTT SNGSSPVLSS SPENGSPFSP SDSLCSPMAS KFSDIPANSA  240
PEKKEYPIDP SLPDIKNSIY STDEFRMFSF KVRPCSRAYS HDWTECPFVH PGENARRRDP  300
RKYHYSCVPC PEFRKGACRR GDMCEYAHGV FECWLHPAQY RTRLCKDGTS CARRVCFFAH  360
TTEELRPLYV STGSAVPSPR SAASAATVMD MAAALNLFPG SPSAHSVMSP PAFNQPMSPT  420
ANGMSHPSAP WPQPNVPALH LPGSNLQSSR LRSSLSARDI PPEDFNMLHD FDAQQLVLND  480
MACYSQPHPN SLNRSGRSNT LTPSNLEELF SAEITSSPRY SDQAAASGVF SPSHKSAFFN  540
QFQQQQSMLS PINTNVFSPK NMEHPLLQAS FGVSSPGRMS PRSMEPISPM SARLSAFAQR  600
EKQQQQLRSL SSRDLGSNNA SIVGSPVGNS WSNWGSPTGK VDWSVNGGGV GRMRRSSSFE  660
QLNNGEEPDL SWVQSLVKES PSEMKEKQAA PISGTAPSGE SLSKVDSVDH SVLGAWLEQM  720
QLDQLVA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	C3H family protein

Link Out ? help Back to Top
Ensembl	OIT02311