PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT02304

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

HRT-like

Protein Properties

Length: 427aa MW: 47603.1 Da PI: 10.1635

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT02304	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	54	2.8e-17	272	302	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGv+l++GsvC r+P+ g+KRC+eHKGm++ OIT02304 272 ICGVALGHGSVCIRPPITGNKRCAEHKGMKV 302 8****************************97 PP
2	HRT-like	36.8	6.7e-12	354	380	2	28
HRT-like 2 CGviledGsvCkrqPvkgRKRCeeHKG 28 CG++ +Gs+C+r+ +g+KRC++HKG OIT02304 354 CGATSLNGSFCRRKLSEGNKRCWQHKG 380 *************************** PP
3	HRT-like	48.2	1.8e-15	398	426	2	30
HRT-like 2 CGviledGsvCkrqPvkgRKRCeeHKGmR 30 CG++l +Gs+C+r+P +g+KRC++HKG++ OIT02304 398 CGATLLNGSFCRRKPSEGNKRCWQHKGRK 426 ***************************87 PP

Sequence ? help Back to Top
Protein Sequence Length: 427 aa Download sequence
MGDTHRSITV RLKREDCKRT KHDSAFSDWK ILIGPNDWTD YLLRKEGAEK YRTQNLPNCT 60 SCSGVYELGI AVTRHQAGRE ASRLDPDYIV PVYVGKSDNV RTRLQRYGRE GAHLENGCSN 120 SALHDQVNVS ASKRAGLFTE AFSRGFSIVY RWAPMNDNKD AEKTEAQLLD RFDYAWNKGS 180 NGVRCHNDVL RKLDGVSRAT RLPAFVRKLQ LSLEKQKGVR IQACKPLLLE NGDDFHDTFK 240 STYFLPEIVK FGRSQPRIVS LSSCVNNDPN NICGVALGHG SVCIRPPITG NKRCAEHKGM 300 KVNGVEHKGM RVKKPISEQL GKIPSVFAGP ATKISSEKMH WNIDIPSVNH SPACGATSLN 360 GSFCRRKLSE GNKRCWQHKG AEIPSVFAGP SVNHSPACGA TLLNGSFCRR KPSEGNKRCW 420 QHKGRKS

Sequence ? help Back to Top

Protein Sequence Length: 427 aa Download sequence

MGDTHRSITV RLKREDCKRT KHDSAFSDWK ILIGPNDWTD YLLRKEGAEK YRTQNLPNCT  60
SCSGVYELGI AVTRHQAGRE ASRLDPDYIV PVYVGKSDNV RTRLQRYGRE GAHLENGCSN  120
SALHDQVNVS ASKRAGLFTE AFSRGFSIVY RWAPMNDNKD AEKTEAQLLD RFDYAWNKGS  180
NGVRCHNDVL RKLDGVSRAT RLPAFVRKLQ LSLEKQKGVR IQACKPLLLE NGDDFHDTFK  240
STYFLPEIVK FGRSQPRIVS LSSCVNNDPN NICGVALGHG SVCIRPPITG NKRCAEHKGM  300
KVNGVEHKGM RVKKPISEQL GKIPSVFAGP ATKISSEKMH WNIDIPSVNH SPACGATSLN  360
GSFCRRKLSE GNKRCWQHKG AEIPSVFAGP SVNHSPACGA TLLNGSFCRR KPSEGNKRCW  420
QHKGRKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	8e-89	HRT-like family protein

Link Out ? help Back to Top
Ensembl	OIT02304