PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT02290

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB_related

Protein Properties

Length: 672aa MW: 73420.6 Da PI: 9.4529

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT02290	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.3	1.5e-07	573	622	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 r +++ E e lv+av++lG+g+W+ + + k+Rt ++k++w ++ OIT02290 573 RRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 622 6789999*****************9988889************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 672 aa Download sequence
MVLQKRLDYG FNGYQVPPIP RATRSARRRG IIRRKANGDG TCPFDLLATV AGKLLGEGES 60 SPDSTGSARG KEQNAIVKDE KIKEKSYAEG CYERGFFISE LVSQAPVVNR SLSELPHAQN 120 DTISGPASVT MSSDCSEKFP FAKQFVNGES REEEHGVFSS CTLDTESDKQ IKIELSNNAK 180 VSTSKGAAIS SSEFPDVWDK KPSTLLVTSD DSVKLSLSPY PAPCRSFPVI RNDVKLDNRD 240 DDENSGCTQP STPNKASGSA PRVRDRPIKK LLASKYWEEN LKSDNEGHAN TGGKTMHACH 300 NRNSAYKHQR SQRDFPFKKR KLFKCGSFSN SDGEMSTDGI CSSPTSDLHG NASGYSKASS 360 GGGTAAGTSV FNGGRASFKP SDSCVKFRIK SFRVPELFVE IPENATVGSL KGTVMEAVTA 420 ILGGGLRIGV VFQGKKVRDD NKTLLQTGIS HDYKLDALGF SLEPNPIQAS PPLGPDCRSC 480 VLPCDTPQPL TRCLSPAITG IQQGRSDDHT GTSLSNFVES DRDSAPSPHY AALEKISANS 540 RALVPVTAVN AEALAVVPLR KPKRSEATQR RIRRPFSVAE VEALVQAVEK LGTGRWRDVK 600 LRAFDNAKHR TYVDLKDKWK TLVHTARISP QQRRGEPVPQ ELLDRVLTAH AYWSQQQAKQ 660 QMKQPSDTYL LL

Sequence ? help Back to Top

Protein Sequence Length: 672 aa Download sequence

MVLQKRLDYG FNGYQVPPIP RATRSARRRG IIRRKANGDG TCPFDLLATV AGKLLGEGES  60
SPDSTGSARG KEQNAIVKDE KIKEKSYAEG CYERGFFISE LVSQAPVVNR SLSELPHAQN  120
DTISGPASVT MSSDCSEKFP FAKQFVNGES REEEHGVFSS CTLDTESDKQ IKIELSNNAK  180
VSTSKGAAIS SSEFPDVWDK KPSTLLVTSD DSVKLSLSPY PAPCRSFPVI RNDVKLDNRD  240
DDENSGCTQP STPNKASGSA PRVRDRPIKK LLASKYWEEN LKSDNEGHAN TGGKTMHACH  300
NRNSAYKHQR SQRDFPFKKR KLFKCGSFSN SDGEMSTDGI CSSPTSDLHG NASGYSKASS  360
GGGTAAGTSV FNGGRASFKP SDSCVKFRIK SFRVPELFVE IPENATVGSL KGTVMEAVTA  420
ILGGGLRIGV VFQGKKVRDD NKTLLQTGIS HDYKLDALGF SLEPNPIQAS PPLGPDCRSC  480
VLPCDTPQPL TRCLSPAITG IQQGRSDDHT GTSLSNFVES DRDSAPSPHY AALEKISANS  540
RALVPVTAVN AEALAVVPLR KPKRSEATQR RIRRPFSVAE VEALVQAVEK LGTGRWRDVK  600
LRAFDNAKHR TYVDLKDKWK TLVHTARISP QQRRGEPVPQ ELLDRVLTAH AYWSQQQAKQ  660
QMKQPSDTYL LL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	312	321	QRDFPFKKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07540.1	1e-125	MYB_related family protein

Link Out ? help Back to Top
Ensembl	OIT02290