PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT02148
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family BBR-BPC
Protein Properties Length: 313aa    MW: 35037 Da    PI: 9.9237
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT02148genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind319.51.1e-9713131301
  GAGA_bind   1 mdddgsrernkgyyepa.aslkenlglqlmssiaerdaki.......rernlalsekkaavaerd..........................maflqrdka 66 
                md +g++ rn+g++epa + lk +lglqlmss+ e+   +       +++++  ++++++++++                           +++ +rd++
   OIT02148   1 MDGNGMNIRNWGFFEPAaTVLKGHLGLQLMSSMDEK---PlfgnirdHHHHHHHHHNHQTHQPHHptvmestnggafhhhrvcgisetpmpIEY-MRDSW 96 
                88888877********9999*************765...33345544333332333333443333888999999999999*********99999.9**** PP

  GAGA_bind  67 laernkalverdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakk 166
                +++      + ++k+l++l  ++    +  +g++ l++t+s++s+q +++p+l +   +    ++le+  +e+      +k+   k+q  k+pk+kkakk
   OIT02148  97 VNH-----KDYRDKYLNVLSGNH----HYLTGYGFLPETSSAQSMQIHEQPNLVKVEPD----SQLEEVCLERDIGGLAKKRGAGKSQLLKSPKSKKAKK 183
                **9.....566789999888555....57789***************777777666555....5555566666666666777777778888888888888 PP

  GAGA_bind 167 kkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafk 266
                +++ ++     + ++s+ +r++a++ks ++v+ng+++D+s +P+PvCsCtGa +qCY+WG+GGWqSaCCtt++S yPLP++tkrrg+RiagrKmS gaf+
   OIT02148 184 ATRVPK----VEPTPSV-PRARAPRKSAEVVINGITMDISVIPIPVCSCTGAAQQCYRWGCGGWQSACCTTNLSSYPLPMNTKRRGSRIAGRKMSLGAFT 278
                777442....2344444.79******************************************************************************** PP

  GAGA_bind 267 klLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                k+LekLa+eGy++sn++DLk +WAkHGtnkfvtir
   OIT02148 279 KVLEKLASEGYNFSNAIDLKPYWAKHGTNKFVTIR 313
                **********************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    
MDGNGMNIRN WGFFEPAATV LKGHLGLQLM SSMDEKPLFG NIRDHHHHHH HHHNHQTHQP  60
HHPTVMESTN GGAFHHHRVC GISETPMPIE YMRDSWVNHK DYRDKYLNVL SGNHHYLTGY  120
GFLPETSSAQ SMQIHEQPNL VKVEPDSQLE EVCLERDIGG LAKKRGAGKS QLLKSPKSKK  180
AKKATRVPKV EPTPSVPRAR APRKSAEVVI NGITMDISVI PIPVCSCTGA AQQCYRWGCG  240
GWQSACCTTN LSSYPLPMNT KRRGSRIAGR KMSLGAFTKV LEKLASEGYN FSNAIDLKPY  300
WAKHGTNKFV TIR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14685.11e-82BBR-BPC family protein