PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OIT01677 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 427aa MW: 46846.9 Da PI: 8.5057 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 30.5 | 6.4e-10 | 42 | 67 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C+++ rt C++G++C+F+H+p OIT01677 42 GEPDCSYYIRTSLCRFGSTCRFNHPP 67 6899********************97 PP | |||||||
2 | zf-CCCH | 37.7 | 3.4e-12 | 90 | 112 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C+++++tGtCk+G++CkF+H++ OIT01677 90 ECQYYLKTGTCKFGATCKFHHPR 112 7********************96 PP | |||||||
3 | zf-CCCH | 34.3 | 4.1e-11 | 135 | 158 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +C +++rt +Ck+G++CkF+H++ OIT01677 135 NECTYYMRTAQCKFGSTCKFHHPE 158 68********************96 PP | |||||||
4 | zf-CCCH | 36.5 | 8.1e-12 | 289 | 313 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C+f+++tG Ck+G+ C+F+H++ OIT01677 289 QPDCQFYMKTGDCKFGAVCRFHHPR 313 789********************96 PP | |||||||
5 | zf-CCCH | 37.3 | 4.6e-12 | 333 | 359 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C f++r+G+Ck+G++CkF H++ OIT01677 333 PGEPMCIFYSRYGICKFGPSCKFDHPM 359 57899********************95 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 427 aa Download sequence |
MDISVSEGPP SLSPSLHQDS LWQMNLRSME SMESGPYPVR EGEPDCSYYI RTSLCRFGST 60 CRFNHPPNRK LALAAASING EYPERIGQLE CQYYLKTGTC KFGATCKFHH PRNKAGIAGR 120 VTLNVLGYPL RPNENECTYY MRTAQCKFGS TCKFHHPEPS NMMVSSRGST VYPPGPSPTT 180 PGQMPYPLSR ASFISGARWQ GSSSYAPLPM LQGVVSFPGF TYNGQLGSVS SAEGQQQTAG 240 NNQVYGSSRS SDKPTMGSEG MNSSYRASSL PVGYYALQGE NVFPERVGQP DCQFYMKTGD 300 CKFGAVCRFH HPRERLLPPP DCLLSPIGLP LRPGEPMCIF YSRYGICKFG PSCKFDHPMR 360 VFTYNISASS STDDPSVRRL LGSSSGTGAL TLTSEGIVEA TSTTPRRLSL SETRKMPPGD 420 NNFEREG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G02830.1 | 1e-170 | C3H family protein |
Link Out ? help Back to Top | |
---|---|
Ensembl | OIT01677 |