PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT01615

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 382aa MW: 44436.9 Da PI: 8.2518

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT01615	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.5	5.7e-06	73	93	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ Cg sF + +Lk+H+++H OIT01615 73 CEECGVSFQKPAHLKQHMQSH 93 *******************99 PP
2	zf-C2H2	17.9	8.4e-06	101	125	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++C+ dC s++rk++L+rH+ H OIT01615 101 FVCHidDCQSSYRRKDHLTRHLLQH 125 89*******************9887 PP
3	zf-C2H2	14.3	0.00012	130	155	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 ++Cp C++ Fs + n++rH + H OIT01615 130 FECPvdGCKRAFSIQGNMTRHVKEmH 155 89********************9988 PP
4	zf-C2H2	19.1	3.5e-06	169	193	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y+C+ Cgk+F+ s Lk+H +H OIT01615 169 YVCSelGCGKVFKFASKLKKHEDSH 193 99*******************9888 PP
5	zf-C2H2	17.3	1.3e-05	260	284	2	23
EET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirt.H 23 kC+ dC +Fs+ksnL +H + H OIT01615 260 KCEfhDCQHTFSTKSNLIQHVKAvH 284 68888***************99877 PP

Sequence ? help Back to Top
Protein Sequence Length: 382 aa Download sequence
MAVKVLSEMG EEKREVIFRD IRRYYCEFCG ICRSKKSLIS SHILSNHHDE MERRKDEANE 60 DVKKKEGPKM NICEECGVSF QKPAHLKQHM QSHSLEIERP FVCHIDDCQS SYRRKDHLTR 120 HLLQHQGKLF ECPVDGCKRA FSIQGNMTRH VKEMHDQYAF PEANLPKQYV CSELGCGKVF 180 KFASKLKKHE DSHVKLETME ALCLEPGCMK HFTNEKCLKE HIESCHQHIV CEICGTKQLK 240 KNIKRHLRTH EEESTSERIK CEFHDCQHTF STKSNLIQHV KAVHLGDKPF SCGIAGCSMK 300 FAFKHVRDRH EKSGCHVYTP GDFVEADEQF RSRPRGGRKR KLPVFEAIMR KRITPSSGTD 360 PVFYQGSEYL SWLLVAESDE EL

Sequence ? help Back to Top

Protein Sequence Length: 382 aa Download sequence

MAVKVLSEMG EEKREVIFRD IRRYYCEFCG ICRSKKSLIS SHILSNHHDE MERRKDEANE  60
DVKKKEGPKM NICEECGVSF QKPAHLKQHM QSHSLEIERP FVCHIDDCQS SYRRKDHLTR  120
HLLQHQGKLF ECPVDGCKRA FSIQGNMTRH VKEMHDQYAF PEANLPKQYV CSELGCGKVF  180
KFASKLKKHE DSHVKLETME ALCLEPGCMK HFTNEKCLKE HIESCHQHIV CEICGTKQLK  240
KNIKRHLRTH EEESTSERIK CEFHDCQHTF STKSNLIQHV KAVHLGDKPF SCGIAGCSMK  300
FAFKHVRDRH EKSGCHVYTP GDFVEADEQF RSRPRGGRKR KLPVFEAIMR KRITPSSGTD  360
PVFYQGSEYL SWLLVAESDE EL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	333	341	RPRGGRKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72050.2	1e-119	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OIT01615