PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT01192

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

SRS

Protein Properties

Length: 352aa MW: 37648.9 Da PI: 7.8633

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT01192	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	217	4.1e-67	139	303	4	154
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa....aeaaskrkrelkskkqsalsstklssaeskkel 100 +a+CqdCGnqakkdC h+RCRtCCksrgfdC+thvkstWvpaa+rrerq ++++ + a+ +++++k++r +s++++++s+t++s++++++++ OIT01192 139 SSATCQDCGNQAKKDCPHRRCRTCCKSRGFDCTTHVKSTWVPAARRRERQLIGGTSTNVNVAAGsssqSTSSAKKPRLVHSQATTTASHTSTSNTTPPRSF 239 5689*******************************************98766655544332233447788899999999**************** PP DUF702 101 etss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +tss lP +v+++avf+cvrv+svddg++e+aYq++v igGhvfkG+LydqG+ee OIT01192 240 DTSSshqdasfkasLPGQVRAPAVFKCVRVTSVDDGDDEFAYQAVVRIGGHVFKGFLYDQGIEE 303 999********************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence
MWSASSSRQM HINYGLSPEM GMFVVHPASF HHHHHHQHSH QENTINFDPI NGSNISTTNT 60 SLGVGVIPLL TATPLTNMVS FDDQDLVSRN RGNDNEGGGF QFFSNQQPQN STNYTKNSNI 120 LGSGNGNNNN IGGSVSSTSS ATCQDCGNQA KKDCPHRRCR TCCKSRGFDC TTHVKSTWVP 180 AARRRERQLI GGTSTNVNVA AGSSSQSTSS AKKPRLVHSQ ATTTASHTST SNTTPPRSFD 240 TSSSHQDASF KASLPGQVRA PAVFKCVRVT SVDDGDDEFA YQAVVRIGGH VFKGFLYDQG 300 IEEGKDNNNY PNFSDLHLGG SGNITNDTSD LYAASTGGGG LLGGSNYGNQ IN

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence

MWSASSSRQM HINYGLSPEM GMFVVHPASF HHHHHHQHSH QENTINFDPI NGSNISTTNT  60
SLGVGVIPLL TATPLTNMVS FDDQDLVSRN RGNDNEGGGF QFFSNQQPQN STNYTKNSNI  120
LGSGNGNNNN IGGSVSSTSS ATCQDCGNQA KKDCPHRRCR TCCKSRGFDC TTHVKSTWVP  180
AARRRERQLI GGTSTNVNVA AGSSSQSTSS AKKPRLVHSQ ATTTASHTST SNTTPPRSFD  240
TSSSHQDASF KASLPGQVRA PAVFKCVRVT SVDDGDDEFA YQAVVRIGGH VFKGFLYDQG  300
IEEGKDNNNY PNFSDLHLGG SGNITNDTSD LYAASTGGGG LLGGSNYGNQ IN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.4	5e-73	SRS family protein

Link Out ? help Back to Top
Ensembl	OIT01192