PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT5G12330.4 | ||||||||
Common Name | LRP1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | SRS | ||||||||
Protein Properties | Length: 407aa MW: 42284.3 Da PI: 8.3307 | ||||||||
Description | Lateral root primordium (LRP) protein-related | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 212.5 | 1e-65 | 193 | 359 | 2 | 154 |
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrel...kskkqsalsstklssae 95 +sgta+CqdCGnqakk+C+++RCRtCCksrgfdC+thvkstWv+aa+rrerq + + a+ +a +s +++ +k++r ++++q+a+s+t++s++ AT5G12330.4 193 ASGTATCQDCGNQAKKECKQRRCRTCCKSRGFDCSTHVKSTWVSAARRRERQVMPTGANPTAGSSLsTSSGTKKPRIVgsqQQQQQQATSHTSTSNT- 289 57999*************************************************9999988888775777888999876545555556666665554. PP DUF702 96 skkeletss...........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +++++etss +P +v+++avf+cvrv++v+dg++e+aYq++v+igGhvfkG+LydqGle AT5G12330.4 290 PPQSFETSSsrqdgggsreaWPGQVRAAAVFKCVRVTAVEDGDDEYAYQAVVKIGGHVFKGFLYDQGLEP 359 67788888889********************************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 1.6E-58 | 196 | 358 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 2.5E-26 | 198 | 240 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 2.3E-30 | 309 | 357 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0009851 | Biological Process | auxin biosynthetic process | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000016 | anatomy | lateral root primordium | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0009005 | anatomy | root | ||||
PO:0009006 | anatomy | shoot system | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009010 | anatomy | seed | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009029 | anatomy | stamen | ||||
PO:0009031 | anatomy | sepal | ||||
PO:0009032 | anatomy | petal | ||||
PO:0009046 | anatomy | flower | ||||
PO:0009052 | anatomy | flower pedicel | ||||
PO:0020100 | anatomy | hypocotyl | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0025281 | anatomy | pollen | ||||
PO:0001078 | developmental stage | plant embryo cotyledonary stage | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0001185 | developmental stage | plant embryo globular stage | ||||
PO:0004507 | developmental stage | plant embryo bilateral stage | ||||
PO:0007511 | developmental stage | lateral root primordium formation stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 407 aa Download sequence Send to blast |
MYIGALCSVA TTRRHNLPTS DSGAFTDWAA TTTTPSRATE DLSLGFNAGS SVIHGGLGSA 60 SVAAGVPSWP PGSSVRYGLP SSAAATEMGM VGLRDVFLVA PAYHHQNAGV ISGSDHMNSN 120 AAAAAALGVG VIPLLTAGTP QQNVEDSDIN FLGNNRRWQN NNNNHETQYL HFKSTNQTTV 180 GTSSNNSGSG SGASGTATCQ DCGNQAKKEC KQRRCRTCCK SRGFDCSTHV KSTWVSAARR 240 RERQVMPTGA NPTAGSSLST SSGTKKPRIV GSQQQQQQQA TSHTSTSNTP PQSFETSSSR 300 QDGGGSREAW PGQVRAAAVF KCVRVTAVED GDDEYAYQAV VKIGGHVFKG FLYDQGLEPK 360 EGFPSMSDLH LGGSANNHNG VSASAPILDP PNVVYGGGGG SGGGFYS |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.32151 | 0.0 | root |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
Genevisible | 245208_at | 0.0 | ||||
Expression Atlas | AT5G12330 | - | ||||
AtGenExpress | AT5G12330 | - | ||||
ATTED-II | AT5G12330 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed during the early stages of root primordium development and disappears prior to the emergence of lateral roots from the parent root. {ECO:0000269|PubMed:7647564}. | |||||
Uniprot | TISSUE SPECIFICITY: Restricted to lateral root primordia. {ECO:0000269|PubMed:7647564}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
TAIR | A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. Expressed in lateral root primordia and induced by auxin. SWP1 is involved in the repression of LRP1 via histone deacetylation. | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18835563}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT5G12330.4 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269|PubMed:18835563}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Regulation -- Hormone ? help Back to Top | ||||||
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Source | Hormone | |||||
AHD | auxin |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT5G12330 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT020614 | 0.0 | BT020614.1 Arabidopsis thaliana At5g12330 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001190295.1 | 0.0 | Lateral root primordium (LRP) protein-like protein | ||||
Swissprot | Q94CK9 | 0.0 | LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1 | ||||
TrEMBL | A0A178URJ4 | 0.0 | A0A178URJ4_ARATH; LRP1 | ||||
STRING | AT5G12330.4 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5883 | 26 | 46 | Representative plant | OGRP1313 | 15 | 49 |
Link Out ? help Back to Top | |
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Phytozome | AT5G12330.4 |
Entrez Gene | 831108 |
iHOP | AT5G12330 |
wikigenes | AT5G12330 |