PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT01006

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

AP2

Protein Properties

Length: 455aa MW: 50741.9 Da PI: 6.4625

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT01006	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	54.4	3.2e-17	148	197	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g OIT01006 148 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 197 78*****************......55**********************998 PP
2	AP2	41.7	2.8e-13	240	289	1	54
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 s+y+GV+ +k grW+A+ + +k+++lg f+++ eAa+a+++a+ k OIT01006 240 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEIEAARAYDKAAIKCS 289 89******.7**5553..2.26******99********9865 PP

Sequence ? help Back to Top
Protein Sequence Length: 455 aa Download sequence
MFDLNLGFEE FAMDDDTVHV SYETTTSEKL RELQMENSGT SNSSIVNVET SSTAGDDEFF 60 SCSDDRRRND GYAFDILKGN EYEESEFVTK ELFPLTGGES AAAELLSPQQ WLDLSANYGG 120 TAEQRIIVVP QQRQQVKKSR RGPRSKSSQY RGVTFYRRTG RWESHIWDCG KQVYLGGFDT 180 AHAAARAYDR AAIKFRGLDA DINFNVADYH DDLKQMSNFT KEEFVHILRR QSTGFSRGSS 240 KYRGVTLHKC GRWEARMGQF LGKKYIYLGL FDSEIEAARA YDKAAIKCSG KEAVTNFELS 300 TYEGELSTED NGGASHNLDL NLGIASSSLA DEQHGNSYQM HSPTTIGSKL PHCRQPLTDR 360 PLLWNGVNTS VFPTFKGTAI GKGMEVDSSP NWTRQDQHPY GGSPSVPLFS TAASSGFANS 420 TSAAAHQHHF STVPLPYHHS PSLANMNFAH YYCRS

Sequence ? help Back to Top

Protein Sequence Length: 455 aa Download sequence

MFDLNLGFEE FAMDDDTVHV SYETTTSEKL RELQMENSGT SNSSIVNVET SSTAGDDEFF  60
SCSDDRRRND GYAFDILKGN EYEESEFVTK ELFPLTGGES AAAELLSPQQ WLDLSANYGG  120
TAEQRIIVVP QQRQQVKKSR RGPRSKSSQY RGVTFYRRTG RWESHIWDCG KQVYLGGFDT  180
AHAAARAYDR AAIKFRGLDA DINFNVADYH DDLKQMSNFT KEEFVHILRR QSTGFSRGSS  240
KYRGVTLHKC GRWEARMGQF LGKKYIYLGL FDSEIEAARA YDKAAIKCSG KEAVTNFELS  300
TYEGELSTED NGGASHNLDL NLGIASSSLA DEQHGNSYQM HSPTTIGSKL PHCRQPLTDR  360
PLLWNGVNTS VFPTFKGTAI GKGMEVDSSP NWTRQDQHPY GGSPSVPLFS TAASSGFANS  420
TSAAAHQHHF STVPLPYHHS PSLANMNFAH YYCRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28550.3	1e-104	AP2 family protein

Link Out ? help Back to Top
Ensembl	OIT01006