PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT00170

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

DBB

Protein Properties

Length: 320aa MW: 35576.9 Da PI: 6.9523

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT00170	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	24.6	5.1e-08	3	43	4	38
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 + C+ ++++e+++fC ++ lC++C H+ H+ OIT00170 3 MQCDVCNKNEASIFCVADEAALCDSCDHRVHHAnklagkHQ 43 79**************************9964446777776 PP
2	zf-B_box	28.3	3.7e-09	54	92	2	38
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38 + + C+ ++e ++ lfC++++ lC++C +++Hk Ht OIT00170 54 QVPLCDICQERRAFLFCQQDRAILCRECDTSIHKAneHT 92 6789*****************************878865 PP

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence
MKMQCDVCNK NEASIFCVAD EAALCDSCDH RVHHANKLAG KHQRFSLLQP SPKQVPLCDI 60 CQERRAFLFC QQDRAILCRE CDTSIHKANE HTQKHNRFLL TGVKLSANSA LYSSTESQST 120 TSSTNSLNTN QDSAQNLKSQ TSIKKPLPLP VPVSVSVSSN ISQEMTVAAN DKGISCCNSQ 180 LVNVEANSLT SSISEYLEML PGWHVEEFLN SSNIPNGFCK IGDSDMFPVW DTEIESNQNS 240 FSPESIGIWV PQAPAVATPH QNQTQMFPPQ NLNFGGQIEF KNTKEVTSVK SSRKWRDDNS 300 FVVPQISPTS TSFKRSRTLW

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75540.1	4e-77	DBB family protein

Link Out ? help Back to Top
Ensembl	OIT00170