PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIS99909
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 277aa    MW: 30933 Da    PI: 9.2835
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIS99909genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.31.5e-12556147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     +++WT eE+e l  +v+++G g Wk I r          R+  ++k++w+++
         OIS99909  5 KQKWTSEEEEALRAGVAKHGAGKWKNIQRDPEfnhllYSRSNIDLKDKWRNL 56
                     79***********************************9************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    
MGNPKQKWTS EEEEALRAGV AKHGAGKWKN IQRDPEFNHL LYSRSNIDLK DKWRNLNVSA  60
NGQGPRDKSR TQKVKADAPA APLLITQAPV SSTPVLQDAA ADTVMEDSSK CALDGKTASK  120
YNQMIYDALS SLKEPNGSDT STIVNFIEQR HEVPQNFRRL LSSRLRRLVQ QDKLEKIENC  180
YRIKKEVLER TKTATPKQKH VGPRQFPSST YLGDTVEEAA KTAVYKVAEA DNKSFVAAEA  240
AKEEARVSKM AEDQDSLLLL AKDIFDRCSQ GEIVLMA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.16e-69MYB_related family protein