PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIS97789
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 184aa    MW: 21164.6 Da    PI: 8.4487
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIS97789genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF47.22.8e-151561147
              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
              k+ien+  r+vtfskRr g+ K  +EL  LC++++ +++fs+tgk +
  OIS97789 15 KKIENEDDRYVTFSKRRSGLYKQDSELVKLCNIDIGIVLFSPTGKPF 61
              68******************************************965 PP
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    
MEGKKTRGRQ SISMKKIENE DDRYVTFSKR RSGLYKQDSE LVKLCNIDIG IVLFSPTGKP  60
FSFFHPTSEA IIDRFLNPNM QLSESTRLVA AHARHKVNQL NNRRELFDNI KEATSAQSLP  120
HDNMNENGQR YQWESIEQFN ADEVKKYEAL LSATVFNLNN RLKHLKNEAS SSSSSEAYSE  180
NTDN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.13e-27M-type_MADS family protein