PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIS97465

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 656aa MW: 71559.4 Da PI: 5.3623

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIS97465	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.2	2.3e-11	484	529	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr ++P+ K++Ka+ L A+ +I++L OIS97465 484 NHVEAERQRREKLNQRFYALRAVVPNV-----SKMDKASLLGDAIAFINEL 529 799*********************6.....5*************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 656 aa Download sequence
MTDYRIPTMN NIWSNTTSDD NMMEAFLSSD PSSFWPGTTT TPTPRTSVSP APPPVTSIAG 60 DPLKSMPYFN QESLQQRLQT LIDGAREAWT YAIFWQSSVV DFASPSVLGW GDGYYKGEED 120 KNKRKTASFS PDFITEQAHR KKVLRELNSL ISGTQTGGEN DAVDEEVTDT EWFFLISMTQ 180 SFVNGSGLPG LAMYSSSPIW VTGAERLAAS HCERARQAQG FGLQTIVCIP SANGVVELGS 240 TELIFQTADL MNKVKVLFNF NIDMGATTGS GSGSCAIHAE PDPSALWLTD PASSAVEVKD 300 SNTVPSSNSS KQLVFGNENS ENGNQNSQQT QGFFTRELNF SEYGFDGSNT RNGNANSSRS 360 CKPESGEILN FGDSTKRSAS SANGSLFSGQ SQFGPGSAEE NKNKNKKRSP ASRGSNDEGM 420 LSFVSGVILP SSNTGKSGGG GDSDQSDLEA SVVKEADSSR VVDPEKKPRK RGRKPANGRE 480 EPLNHVEAER QRREKLNQRF YALRAVVPNV SKMDKASLLG DAIAFINELK SKVQNSDSDK 540 EELRNQIESL RKELANKGSN YTGPPPSNQD LKILDMDIDV KVIGWDAMIR IQSNKKNHPA 600 ARLMAALMEL DLDVHHASVS VVNELMIQQA TVKMGSRLYT QEQLRISLTS RIAESR

Sequence ? help Back to Top

Protein Sequence Length: 656 aa Download sequence

MTDYRIPTMN NIWSNTTSDD NMMEAFLSSD PSSFWPGTTT TPTPRTSVSP APPPVTSIAG  60
DPLKSMPYFN QESLQQRLQT LIDGAREAWT YAIFWQSSVV DFASPSVLGW GDGYYKGEED  120
KNKRKTASFS PDFITEQAHR KKVLRELNSL ISGTQTGGEN DAVDEEVTDT EWFFLISMTQ  180
SFVNGSGLPG LAMYSSSPIW VTGAERLAAS HCERARQAQG FGLQTIVCIP SANGVVELGS  240
TELIFQTADL MNKVKVLFNF NIDMGATTGS GSGSCAIHAE PDPSALWLTD PASSAVEVKD  300
SNTVPSSNSS KQLVFGNENS ENGNQNSQQT QGFFTRELNF SEYGFDGSNT RNGNANSSRS  360
CKPESGEILN FGDSTKRSAS SANGSLFSGQ SQFGPGSAEE NKNKNKKRSP ASRGSNDEGM  420
LSFVSGVILP SSNTGKSGGG GDSDQSDLEA SVVKEADSSR VVDPEKKPRK RGRKPANGRE  480
EPLNHVEAER QRREKLNQRF YALRAVVPNV SKMDKASLLG DAIAFINELK SKVQNSDSDK  540
EELRNQIESL RKELANKGSN YTGPPPSNQD LKILDMDIDV KVIGWDAMIR IQSNKKNHPA  600
ARLMAALMEL DLDVHHASVS VVNELMIQQA TVKMGSRLYT QEQLRISLTS RIAESR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	466	474	KKPRKRGRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32640.1	0.0	bHLH family protein

Link Out ? help Back to Top
Ensembl	OIS97465