PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIS96980
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family AP2
Protein Properties Length: 524aa    MW: 57248.8 Da    PI: 5.7332
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIS96980genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2483e-15145204155
       AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
               s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  OIS96980 145 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEEKAARAYDLAALKYWG 204
               57*******************666664477446*************************98 PP
2AP247.25.5e-15247298155
       AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
               s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  OIS96980 247 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 298
               57****************988532...5************************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 524 aa     Download sequence    
MDMDSSSENW LGFSLSNINS NNNNNSSINL PSNNASELCL CQSFNSNPNS GVEENGKGAD  60
APPKLEDFLG GSSSITAAAN EVCWENPATT TTTTICEYGS ELKTIAASFL CSFSADQNNS  120
QNKQLAVVAL PPAKKTVETF GQRTSIYRGV TRHRWTGRYE AHLWDNSCRR EGQSRKGRQV  180
YLGGYDKEEK AARAYDLAAL KYWGPTTTTN FPVLNYEKEL EEMKSMTRQE FVASLRRKSS  240
GFSRGASIYR GVTRHHQHGR WQARIGRVAG NKDLYLGTFS TQEEAAEAYD IAAIKFRGLN  300
AVTNFDISRY DVKSIASSNL PVGGMNSKSK TSSESASESS KNVEANRSDD RDRDRDISSA  360
TSAPFSSQAP NMVNLGFGLP IKQDSSDFWS ILGYTNDQNN GSKNPSANAT FFHGPPDGTT  420
IQAQGATLFS MDLPATTTSL NEVNNNQVIF NEEEYYQQQQ SGSCSTITSV PSDISMALNS  480
NATATTTTLD GSNFGNWMPP PLHSFQATAK NNLAPFQTPI FGME
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-138AP2 family protein