PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIS96470

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

WRKY

Protein Properties

Length: 567aa MW: 61896.4 Da PI: 6.6196

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIS96470	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96.5	1.8e-30	221	278	2	60
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 +DgynWrKYGqK v+g+ef+rsYY+Ct+++C +kk+vers+ d+++++++Y g+H+h+k OIS96470 221 EDGYNWRKYGQKLVRGNEFTRSYYKCTYPNCLAKKQVERSH-DGHITDVHYIGKHEHPK 278 8**************************************.*************85 PP
2	WRKY	104.6	5.4e-33	398	456	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK vkg+++prsYYrC+ agCpvkk+ver+++dpk+v++tYeg+H+h+ OIS96470 398 VNDGHRWRKYGQKFVKGNPNPRSYYRCSIAGCPVKKHVERASHDPKMVVTTYEGQHDHN 456 58********************************************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 567 aa Download sequence
MGTPREEATN EVSSENLQPK PDPDPHPATN NPELKEKGSC ESMSADVVSG ELQKRLSPAV 60 GAQASKSNQE ETTHPSTCQD ASSNVSQSIV EDISFSKVQG YQSENVRQKQ GLKSEGDVSG 120 CSQLSILPKD SDAKSCGSES GVTEKVVSPL SGKASDSSDQ IQSQIMEVAV SRSDQQLVTY 180 PIRPEKTLDK LQPRRNPDSS GHGLPSDRGT TLFRLPEKPL EDGYNWRKYG QKLVRGNEFT 240 RSYYKCTYPN CLAKKQVERS HDGHITDVHY IGKHEHPKTP SGPQTPPGSV VPLQMRQPDI 300 PMLTASEEAE GEKSTVLGET CEPSKPSEAP LALDIVSAGG GMQVTPLKPH KLEYEVDKNS 360 GPDSKRQKKD IAKDDTPPIK SHSQPRHIVQ TVSEVDIVND GHRWRKYGQK FVKGNPNPRS 420 YYRCSIAGCP VKKHVERASH DPKMVVTTYE GQHDHNMSWF RTLSQITAAP DLSLTGISGE 480 SRLESGETKH VGESISESGE NKHVGESRIE SGENKHVGAS ISQSGETKHV GESRVESGEN 540 KHVGESKSES GENKHVNIDM VVHIGAN

Sequence ? help Back to Top

Protein Sequence Length: 567 aa Download sequence

MGTPREEATN EVSSENLQPK PDPDPHPATN NPELKEKGSC ESMSADVVSG ELQKRLSPAV  60
GAQASKSNQE ETTHPSTCQD ASSNVSQSIV EDISFSKVQG YQSENVRQKQ GLKSEGDVSG  120
CSQLSILPKD SDAKSCGSES GVTEKVVSPL SGKASDSSDQ IQSQIMEVAV SRSDQQLVTY  180
PIRPEKTLDK LQPRRNPDSS GHGLPSDRGT TLFRLPEKPL EDGYNWRKYG QKLVRGNEFT  240
RSYYKCTYPN CLAKKQVERS HDGHITDVHY IGKHEHPKTP SGPQTPPGSV VPLQMRQPDI  300
PMLTASEEAE GEKSTVLGET CEPSKPSEAP LALDIVSAGG GMQVTPLKPH KLEYEVDKNS  360
GPDSKRQKKD IAKDDTPPIK SHSQPRHIVQ TVSEVDIVND GHRWRKYGQK FVKGNPNPRS  420
YYRCSIAGCP VKKHVERASH DPKMVVTTYE GQHDHNMSWF RTLSQITAAP DLSLTGISGE  480
SRLESGETKH VGESISESGE NKHVGESRIE SGENKHVGAS ISQSGETKHV GESRVESGEN  540
KHVGESKSES GENKHVNIDM VVHIGAN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G26640.1	2e-70	WRKY family protein

Link Out ? help Back to Top
Ensembl	OIS96470