PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIS96134
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 264aa    MW: 30158.6 Da    PI: 6.0663
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIS96134genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.48.2e-111952351055
               HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
       HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
               r+RR++iN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  OIS96134 195 RKRREKINERLKILQNLVPNG-----TKVDISTMLEEAVQYVKFLQ 235
               9******************97.....8******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    
MLFLNNTSHE YLQQYNGVTN LFQVTNNHPD ESTDFYMMGH NNLENSSVNP SFQDDDFMKE  60
MVSLKDDIGK EMLLKRKFHE VELQSGAEDQ KLEDTKNPKK KTRVSREEPK NKKIAQPKVK  120
KNQKNMQINN EEVGEQESNN AGNCKSGQST SSCSAEEDSN GSQELNTNSD TKSNLNSKTR  180
ASRGTATDPQ SLYARKRREK INERLKILQN LVPNGTKVDI STMLEEAVQY VKFLQIQIKL  240
LSSDDMWMYA PIAYNGMEMD LSHT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1195200RKRREK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.11e-55bHLH family protein