PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RDY05418.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Mucuna
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Family | LBD | ||||||||
Protein Properties | Length: 102aa MW: 11897.1 Da PI: 9.2826 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 90.1 | 2.8e-28 | 8 | 80 | 2 | 74 |
DUF260 2 CaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvy 74 CaaCk++rrkC+++C lapyfpa+qpk f n+hklFG++n++k+lk l++ ++++am+s++ + + r + P + RDY05418.1 8 CAACKHQRRKCTSECLLAPYFPADQPKVFFNFHKLFGVNNIVKILKMLEPIQKKIAMDSIIIQTNYRDKYPLH 80 *******************************************************************999975 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 102 aa Download sequence |
MKRKVPLCAA CKHQRRKCTS ECLLAPYFPA DQPKVFFNFH KLFGVNNIVK ILKMLEPIQK 60 KIAMDSIIIQ TNYRDKYPLH YQTWLAEGEL EGGLCKVQLE VE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47870.1 | 2e-31 | LBD family protein |