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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | RDY02727.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Mucuna
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| Family | NF-YC | ||||||||
| Protein Properties | Length: 308aa MW: 33619.2 Da PI: 4.7246 | ||||||||
| Description | NF-YC family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
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| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | NF-YC | 61.8 | 1.4e-19 | 6 | 86 | 18 | 98 |
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
++++P arikki++adedv +i+ +Pvl+ska elf+ +l r++ + ++ +t+ ++ +v++ ++fdfl d+v +
RDY02727.1 6 DTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITVQKGAKTMSSLHLKHCVESYNVFDFLRDVVSK 86
5789**************************************************************************986 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 308 aa Download sequence |
MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCDRT YEITVQKGAK 60 TMSSLHLKHC VESYNVFDFL RDVVSKVPDY SQGHGHAEAG ADDRAIPKRR KAVGDDSNDS 120 DEEAKRSKMH ELSHSGSSTG RGRGRGRGRG RGRGRPPLVR ETHHQDPESE PCTSAQPGNQ 180 QNTNTSVAAV DGGSESKEIT KENIALPVVS TDSLPNIDLN ASMNENDDKP STAADATLPE 240 PATTSLPEPA TASLPEPPME SKHEEIPGWS LSDVDKMAID SMQLAQLGRP LEEEEEDYDE 300 EEDITANI |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 141 | 150 | RGRGRGRGRG |
| 2 | 141 | 151 | RGRGRGRGRGR |
| 3 | 143 | 152 | RGRGRGRGRG |
| 4 | 143 | 153 | RGRGRGRGRGR |
| 5 | 145 | 154 | RGRGRGRGRG |
| 6 | 145 | 155 | RGRGRGRGRGR |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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| Hit ID | E-value | Description | ||||
| AT3G12480.1 | 2e-79 | NF-YC family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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