PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RDX97674.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Mucuna
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Family | C3H | ||||||||
Protein Properties | Length: 233aa MW: 26507 Da PI: 9.0408 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 30.8 | 5e-10 | 80 | 100 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C+++++ G Ck+Gd+C+FaHg RDX97674.1 80 ACPDYRK-GNCKRGDTCQFAHG 100 7******.*************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence |
MMIPNVEIPR WDADGGALSP FSSNAEDTCS FSTDDFRMFQ FKVRKCPRGR FHEWTECPYA 60 HPSEKARRRD PRKYLYSATA CPDYRKGNCK RGDTCQFAHG VFECWLHPSR YRTQLCKDGT 120 ACRRRVCFFA HTTHQLRLVA NAVSSPTSVI NSSFSDSPPS SPYVREIVNS MRKVQLEEGP 180 SSGLTRCLFG LPRGGFLSPN GFEEEPAMER VESGKDIRAR IYAKLSRDNS IRA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G25900.2 | 4e-78 | C3H family protein |