PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RDX78387.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Mucuna
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Family | LBD | ||||||||
Protein Properties | Length: 240aa MW: 26587.5 Da PI: 9.6905 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 139.1 | 1.5e-43 | 10 | 109 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk++rrkC+++Cv+apyfp ++p++fa+vhk+FGasnv kll++l+ +reda++sl+yeAear+rdPvyG+vg+i+ lq++l+ql++el+++k+ RDX78387.1 10 PCAACKIQRRKCTQECVFAPYFPPDNPQRFAYVHKVFGASNVAKLLNELNAAQREDAVKSLAYEAEARLRDPVYGCVGLISILQHRLKQLQTELHHAKK 108 7**********************************************************************************************9998 PP DUF260 100 e 100 e RDX78387.1 109 E 109 7 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence |
MSSSSSSSSP CAACKIQRRK CTQECVFAPY FPPDNPQRFA YVHKVFGASN VAKLLNELNA 60 AQREDAVKSL AYEAEARLRD PVYGCVGLIS ILQHRLKQLQ TELHHAKKEL ASYVGPHAML 120 PPPPPPPPRT FSLFPFKTAP PFGFNDDGAS ASHAAFNHLS LISPSPAADH SLPLPHHQHL 180 MRSPVHPKPQ TDPGSNEIGI VVLGRKQKGV KNKRETNMQK EDGRCILESR ICIDVRQRFF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66870.1 | 9e-64 | LBD family protein |