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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | RDX68375.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Mucuna
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| Family | NF-YC | ||||||||
| Protein Properties | Length: 299aa MW: 33440.1 Da PI: 4.6459 | ||||||||
| Description | NF-YC family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | NF-YC | 59.4 | 7.6e-19 | 6 | 86 | 18 | 98 |
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
++++P arikki++adedv +i+ +P l+ska elf+ +l r++ + +t++ ++++v+ ++fdfl div +
RDX68375.1 6 DTRFPAARIKKIMQADEDVGKIAMAVPLLVSKALELFLQDLCDRTYEITLMRGAKTMNAFHLKQCVQTFNVFDFLKDIVSK 86
5789**************************************************************************986 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 299 aa Download sequence |
MRKKLDTRFP AARIKKIMQA DEDVGKIAMA VPLLVSKALE LFLQDLCDRT YEITLMRGAK 60 TMNAFHLKQC VQTFNVFDFL KDIVSKVPDL GGSVATGDDH TVTKRRKVVE DDDNDSDEEF 120 KRNKKPEPGH TSGRGRGRGR GRGRGRGIKT VDQEMSSHAK FEDDSDALKQ NDKHTQSNES 180 MENVSEPEEV KQTFPVSKPP EVSVRNFDLN MDPDEDDMDS LATPTPAPTS SSSKSMSEEK 240 HEEYPGWSLS DVEKMTIDPM QLTNLNGRID EDEEDYDEEI VKQKNDASGA GQANIGAPE |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 134 | 143 | RGRGRGRGRG |
| 2 | 134 | 144 | RGRGRGRGRGR |
| 3 | 136 | 145 | RGRGRGRGRG |
| 4 | 136 | 146 | RGRGRGRGRGR |
| 5 | 138 | 147 | RGRGRGRGRG |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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| Hit ID | E-value | Description | ||||
| AT3G12480.1 | 2e-57 | NF-YC family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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