PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OVA18103.1

Organism

Macleaya cordata

Taxonomic ID

56857

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Macleaya

Family

C2H2

Protein Properties

Length: 600aa MW: 66279.6 Da PI: 8.717

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OVA18103.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.4	2.6e-05	65	87	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H OVA18103.1 65 FVCEICSKGFQRDQNLQLHRRGH 87 89*******************88 PP
2	zf-C2H2	11.6	0.00087	141	163	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H + + OVA18103.1 141 WKCEKCSKKYAVQSDWKAHSKIC 163 58*****************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 600 aa Download sequence
MNSGDGVSVP SSINRGFTQE RNSNPNPNPE SNPVAKKKRN LPGTPDPDAE VIALSPKSLM 60 ATNRFVCEIC SKGFQRDQNL QLHRRGHNLP WKLKQRTSKE IRKKVYICPE KNCVHHDPSR 120 ALGDLTGIKK HFSRKHGEKK WKCEKCSKKY AVQSDWKAHS KICGTKEYKC DCGTLFSRKD 180 SFITHRAFCD ALAEESARFN PAVMAKNLNF RTDSLNDIRS TNPASASLLH AFNREGLDAM 240 NDPQLCPIFR SDFTNPDVIN PLDTHESKPR LSLWLDHQAN SQLNHQIDPM GVNSDAFLAS 300 KSTGFPELSQ MASTNLFGAS PIVNYPAGCI STQWMNRCSG ESTGVNLSLS TSPRGLKKEG 360 DQNKGVMVEN LASLYSSDNQ NQQHQQNQSS SSSAHMSATA LLQKAAQMGA TRSSPSFVGS 420 FGVMSSSSSD TTGFINSHVS QAAQNRNDFH QLFRQAEKHQ QQQQPPDHQN NLNQVLMNTS 480 TNNVNGDHHG MFSGLMNLSS LTDHHTATGN NNLDRLMMSA AANDNDQESQ STTTAPLKLR 540 TSADSVVDHS LTRDFLGVGG HHHHHHNVSS NPFLQQELVK FASMGSAMDH FNRYSSTGSH

Sequence ? help Back to Top

Protein Sequence Length: 600 aa Download sequence

MNSGDGVSVP SSINRGFTQE RNSNPNPNPE SNPVAKKKRN LPGTPDPDAE VIALSPKSLM  60
ATNRFVCEIC SKGFQRDQNL QLHRRGHNLP WKLKQRTSKE IRKKVYICPE KNCVHHDPSR  120
ALGDLTGIKK HFSRKHGEKK WKCEKCSKKY AVQSDWKAHS KICGTKEYKC DCGTLFSRKD  180
SFITHRAFCD ALAEESARFN PAVMAKNLNF RTDSLNDIRS TNPASASLLH AFNREGLDAM  240
NDPQLCPIFR SDFTNPDVIN PLDTHESKPR LSLWLDHQAN SQLNHQIDPM GVNSDAFLAS  300
KSTGFPELSQ MASTNLFGAS PIVNYPAGCI STQWMNRCSG ESTGVNLSLS TSPRGLKKEG  360
DQNKGVMVEN LASLYSSDNQ NQQHQQNQSS SSSAHMSATA LLQKAAQMGA TRSSPSFVGS  420
FGVMSSSSSD TTGFINSHVS QAAQNRNDFH QLFRQAEKHQ QQQQPPDHQN NLNQVLMNTS  480
TNNVNGDHHG MFSGLMNLSS LTDHHTATGN NNLDRLMMSA AANDNDQESQ STTTAPLKLR  540
TSADSVVDHS LTRDFLGVGG HHHHHHNVSS NPFLQQELVK FASMGSAMDH FNRYSSTGSH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	92	104	KLKQRTSKEIRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66730.1	1e-101	C2H2 family protein