PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OVA17646.1

Organism

Macleaya cordata

Taxonomic ID

56857

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Macleaya

Family

C2H2

Protein Properties

Length: 399aa MW: 44404.4 Da PI: 9.3663

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OVA17646.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14	0.00014	156	179	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++Cp Cg+ F + + ++H++ H OVA17646.1 156 FPCPTCGEIFQKPQLVEHHQSIkH 179 89*****************99888 PP

Sequence ? help Back to Top
Protein Sequence Length: 399 aa Download sequence
MATSVRSFFN TFVSSILILL VHLGCFVFTT DRPHNSTNKK RKVTPLSPSN PSSPSSSSST 60 RHLKPHKSLS SSWSYIKRIF SFKHHSKKSD TNENETQPSS PTLASARSSQ HSIVTPADII 120 VLSPPTRKRR TGSSSFSDPD FSLIDQRSFP LRNDIFPCPT CGEIFQKPQL VEHHQSIKHA 180 VTELLDDDSG KNIVRIIFKT GWNSKDQKHS NPTIHRILKI HNSQKILSRF EEYRESVKAK 240 EAKKSGGRRR DERCIADGNE LLRFHCSTCI CNLGQNGKSS ICTQQYCSVC GIIRSGFSAK 300 MDGISTVSSS WRAHAAFPEE LEEEFAFMNV KRVMLVCRVI AGRIGSEYQG MICDKDEAAG 360 FDSVIGGGGG GAQSRLDEEE LLVFNPRAVL PCFAIIYSV

Sequence ? help Back to Top

Protein Sequence Length: 399 aa Download sequence

MATSVRSFFN TFVSSILILL VHLGCFVFTT DRPHNSTNKK RKVTPLSPSN PSSPSSSSST  60
RHLKPHKSLS SSWSYIKRIF SFKHHSKKSD TNENETQPSS PTLASARSSQ HSIVTPADII  120
VLSPPTRKRR TGSSSFSDPD FSLIDQRSFP LRNDIFPCPT CGEIFQKPQL VEHHQSIKHA  180
VTELLDDDSG KNIVRIIFKT GWNSKDQKHS NPTIHRILKI HNSQKILSRF EEYRESVKAK  240
EAKKSGGRRR DERCIADGNE LLRFHCSTCI CNLGQNGKSS ICTQQYCSVC GIIRSGFSAK  300
MDGISTVSSS WRAHAAFPEE LEEEFAFMNV KRVMLVCRVI AGRIGSEYQG MICDKDEAAG  360
FDSVIGGGGG GAQSRLDEEE LLVFNPRAVL PCFAIIYSV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	126	131	TRKRRT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29660.1	1e-106	C2H2 family protein