PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OVA17207.1

Organism

Macleaya cordata

Taxonomic ID

56857

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Macleaya

Family

C3H

Protein Properties

Length: 757aa MW: 81639.3 Da PI: 6.5943

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OVA17207.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.2	2.5e-07	328	348	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg OVA17207.1 328 PCPDFRK-GACRRGDMCEYAHG 348 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 757 aa Download sequence
MCGGPESLKS NTSSSRSSPS PSPSSSPPSP SPSPLEDSKT TNKDMNHLTV ETDVSLCSLL 60 ELAANNDLDG FKRLIERDIS AVDEIELWYG RQKGSKQMVL EHRTPLMVAA TYGSVDVLKL 120 ILALSQADVN CSCGPDRSTA LHCAASGGSV NAIDVVKLLL HSGANVNSVD ADGRRPADVI 180 VVSPRFPDLK TALEELLTNN RGSSDAPSSE CNLRISTATS ITSSPPLSSS PDNGSPSSAS 240 DSTSSPMTIK LNDLPVSSAP EKKEYPIDPS LPDIKNSIYA TDEFRMFSFK VRPCSRAYSH 300 DWTECPFVHP GENARRRDPR KFHYSCVPCP DFRKGACRRG DMCEYAHGVF ECWLHPAQYR 360 TRLCKDGTSC MRRVCFFAHT SDELRPLYVS TGSAVPSPRS TASAATVMDM AAAMSLLPGS 420 PSSVSVMSPS PFTPPMSPSA NGISHSSLAW PQPNVPTLHL PGSNLQSSRL RSSLNARDIP 480 ADDYNLDFEI QHQQLLNDLA CLSQQPRLSS SSSLNRPIRT KTLTPSNLED LFTAEISLSP 540 RYSDQAAAAF SPSHKSNILN QFQQQQSMLS PINTSVFSPK NVDHHPLLQN SFGLSSPGRM 600 SPRSMETLSP MGSRLSAFAQ REKQQQQLRS LSSRELGSNA VGVVGSPVNS WSKWGSPTGK 660 LDWTVHGDEL GRFRRGASST EMGNNGEEPD LSWVQTLVKE SPPEMKEKLT VPSLAGGGGG 720 GASSGEGSNL NSQGESNMDH SVLGAWLEQM QLDPLVT

Sequence ? help Back to Top

Protein Sequence Length: 757 aa Download sequence

MCGGPESLKS NTSSSRSSPS PSPSSSPPSP SPSPLEDSKT TNKDMNHLTV ETDVSLCSLL  60
ELAANNDLDG FKRLIERDIS AVDEIELWYG RQKGSKQMVL EHRTPLMVAA TYGSVDVLKL  120
ILALSQADVN CSCGPDRSTA LHCAASGGSV NAIDVVKLLL HSGANVNSVD ADGRRPADVI  180
VVSPRFPDLK TALEELLTNN RGSSDAPSSE CNLRISTATS ITSSPPLSSS PDNGSPSSAS  240
DSTSSPMTIK LNDLPVSSAP EKKEYPIDPS LPDIKNSIYA TDEFRMFSFK VRPCSRAYSH  300
DWTECPFVHP GENARRRDPR KFHYSCVPCP DFRKGACRRG DMCEYAHGVF ECWLHPAQYR  360
TRLCKDGTSC MRRVCFFAHT SDELRPLYVS TGSAVPSPRS TASAATVMDM AAAMSLLPGS  420
PSSVSVMSPS PFTPPMSPSA NGISHSSLAW PQPNVPTLHL PGSNLQSSRL RSSLNARDIP  480
ADDYNLDFEI QHQQLLNDLA CLSQQPRLSS SSSLNRPIRT KTLTPSNLED LFTAEISLSP  540
RYSDQAAAAF SPSHKSNILN QFQQQQSMLS PINTSVFSPK NVDHHPLLQN SFGLSSPGRM  600
SPRSMETLSP MGSRLSAFAQ REKQQQQLRS LSSRELGSNA VGVVGSPVNS WSKWGSPTGK  660
LDWTVHGDEL GRFRRGASST EMGNNGEEPD LSWVQTLVKE SPPEMKEKLT VPSLAGGGGG  720
GASSGEGSNL NSQGESNMDH SVLGAWLEQM QLDPLVT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	C3H family protein