PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OVA16834.1

Organism

Macleaya cordata

Taxonomic ID

56857

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Macleaya

Family

FAR1

Protein Properties

Length: 850aa MW: 97401.9 Da PI: 6.9849

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OVA16834.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	65.1	1.8e-20	151	244	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 +fY+++Ak++GFs+r+++++ + + it+r+f+C + g+++ + +++ k +r+r+++r+gC+a +++ k+ +w++t +++ HnHel OVA16834.1 151 EFYCSFAKQCGFSIRRHRTRGKdGVGRGITRRDFTCHRGGYPQMKPSDDGKLQRNRKSSRCGCQAYMRIVKRAdfdVPEWRITGFSNIHNHELL 244 6*************999887455667****************9***************98887676789***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 850 aa Download sequence
MENLSRPAPR KDLYQVLGIS RASTDLEIKT AFRKLALKYH PDKNIGNSEV AEFFKEVAYS 60 YNILSDPERR RHYDTVGFEV LYLQSHLSIL ERMSEATSLV METSENGTDL SPDDIGTIEE 120 MPEDTILSRQ TSVNLVPFIG QRFVSQDAAY EFYCSFAKQC GFSIRRHRTR GKDGVGRGIT 180 RRDFTCHRGG YPQMKPSDDG KLQRNRKSSR CGCQAYMRIV KRADFDVPEW RITGFSNIHN 240 HELLKSNEVS LLPAYCTISA DDKSRICMFA KAGMSVRQML RLMELEKGVK LGCLPFTEID 300 VRNLLQSFRN VDRDNDAIDL LAMCKNIKDE DPDFKYEFKI DAHNRLEHIA WSYASSVRLY 360 ETFGDAVVFD TTHRLDAYDM LLGIWVGVDN HGMNCFFGCV LLRDENMQSF SWALKTFLGF 420 MKGKAPRTIL TDQNIWLKEA VAVELPDTKH AFCIWHIIPK FSDWFSVLLG SQYDSWKAEF 480 HRLYNLDMVE DFEVGWREMI NAYELHGNKH IVSLYALRTY WALPYLRCYF FAGMTSTFQS 540 ESINTFIQRF LSAQSQLNQF VQQVAVVVEF RDQAGAKQKM QRKLHKVSLK TGSPIESHAA 600 TVLTPYAFSK LQEELVLAPQ YASFQVEEGC FHVRHHTQVD GGCKVIWVPR EELISCSCHL 660 FEFSGIICRH VLRVLSTNNC FHIPDQYLPN RWHAFSLSSL KSFRTTSERD HRERVQVLHS 720 MVSTLLTESV ETGERLEVAC EQISMVLSRI KEFPRSTHGS TDVIYDSPSD SLILPEVEDS 780 DGIVHSFTAG NPHDSISFGK LKERRPKDGL DFSRKRRRCS VPCCGQFGHD ATDCPMMGGE 840 GLNVDGLGFL

Sequence ? help Back to Top

Protein Sequence Length: 850 aa Download sequence

MENLSRPAPR KDLYQVLGIS RASTDLEIKT AFRKLALKYH PDKNIGNSEV AEFFKEVAYS  60
YNILSDPERR RHYDTVGFEV LYLQSHLSIL ERMSEATSLV METSENGTDL SPDDIGTIEE  120
MPEDTILSRQ TSVNLVPFIG QRFVSQDAAY EFYCSFAKQC GFSIRRHRTR GKDGVGRGIT  180
RRDFTCHRGG YPQMKPSDDG KLQRNRKSSR CGCQAYMRIV KRADFDVPEW RITGFSNIHN  240
HELLKSNEVS LLPAYCTISA DDKSRICMFA KAGMSVRQML RLMELEKGVK LGCLPFTEID  300
VRNLLQSFRN VDRDNDAIDL LAMCKNIKDE DPDFKYEFKI DAHNRLEHIA WSYASSVRLY  360
ETFGDAVVFD TTHRLDAYDM LLGIWVGVDN HGMNCFFGCV LLRDENMQSF SWALKTFLGF  420
MKGKAPRTIL TDQNIWLKEA VAVELPDTKH AFCIWHIIPK FSDWFSVLLG SQYDSWKAEF  480
HRLYNLDMVE DFEVGWREMI NAYELHGNKH IVSLYALRTY WALPYLRCYF FAGMTSTFQS  540
ESINTFIQRF LSAQSQLNQF VQQVAVVVEF RDQAGAKQKM QRKLHKVSLK TGSPIESHAA  600
TVLTPYAFSK LQEELVLAPQ YASFQVEEGC FHVRHHTQVD GGCKVIWVPR EELISCSCHL  660
FEFSGIICRH VLRVLSTNNC FHIPDQYLPN RWHAFSLSSL KSFRTTSERD HRERVQVLHS  720
MVSTLLTESV ETGERLEVAC EQISMVLSRI KEFPRSTHGS TDVIYDSPSD SLILPEVEDS  780
DGIVHSFTAG NPHDSISFGK LKERRPKDGL DFSRKRRRCS VPCCGQFGHD ATDCPMMGGE  840
GLNVDGLGFL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	814	818	RKRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1 family protein