PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OVA15319.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Macleaya
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 143aa MW: 15938.1 Da PI: 10.1503 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 65.8 | 4.3e-21 | 17 | 65 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 krie + rqvtfskRr ++KKA+EL++LC+ae vi+fs+ gk y + OVA15319.1 17 KRIEKEDARQVTFSKRRVCLFKKASELCTLCAAETDVIVFSPAGKPYSF 65 79******************************************98877 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 143 aa Download sequence |
MSSKRKLSKG RRKIEIKRIE KEDARQVTFS KRRVCLFKKA SELCTLCAAE TDVIVFSPAG 60 KPYSFGHPSV DTVVDHYLSG GNYASQNSIG GVHPHVGARI RDLNRQYTEA LNELDAEKKR 120 GMESEKEGKT LETNTGGKNP LKN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 5e-31 | M-type_MADS family protein |