PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OVA06911.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Macleaya
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 234aa MW: 26318.9 Da PI: 10.1218 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 74.7 | 7.4e-24 | 16 | 63 | 1 | 48 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48 krie + rqvtfskRr+g++KKA+EL++LC+ae+a+i+fs+ gk + OVA06911.1 16 KRIEKEDARQVTFSKRRAGLFKKASELCILCGAEIAIIVFSPAGKSFS 63 79******************************************9665 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence |
MVTRKRSMGR QKIEIKRIEK EDARQVTFSK RRAGLFKKAS ELCILCGAEI AIIVFSPAGK 60 SFSFGHPSVE SVVDSFLSRN SSPRDNVGRP TPLIDAHRGA SVRDLNKQYS EVLNQLEAEK 120 KRGVTLEKLR KASRNQFWWE SPIEELGLHE LEQLRVSMEE LKKNVAMRVD ELLINTTSFL 180 PPAAAAASSL GTTHHDDQFP FETKPKPNHD HHTSVVSHGY GSTYGFGFGR GRPY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 2e-52 | M-type_MADS family protein |