PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022159768.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

C3H

Protein Properties

Length: 341aa MW: 37542.3 Da PI: 7.4774

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022159768.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	25	3.2e-08	86	110	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC+ f++ GtC+y +C+FaH+ XP_022159768.1 86 FKTKLCCKFRA-GTCPYITNCNFAHS 110 69*******.***********8 PP
2	zf-CCCH	18.7	3.1e-06	160	185	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk + C+ f+ C+yGd+C+F H+ XP_022159768.1 160 YKGRHCKKFYTEEGCPYGDSCTFLHD 185 78888********************7 PP
3	zf-CCCH	41.9	1.7e-13	222	247	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg XP_022159768.1 222 WKTRICNKWELTGYCPFGNKCHFAHG 247 8************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence
MDYSGGNVVH VIPGTSTDNW PGEVWATEDE YRAWNNGGDG DTPSNSSYDQ RQSQSRSGSE 60 PPNKKSRNSQ DVTSSNRSKA IGKMFFKTKL CCKFRAGTCP YITNCNFAHS IEELRRPPPN 120 WQEIVAAHEE EKAVLLEPRE EFQIPSLGTS NFGSESQRSY KGRHCKKFYT EEGCPYGDSC 180 TFLHDEQSKN RESVAISLGP GGYSGCGGGS SGNGSNIKPS NWKTRICNKW ELTGYCPFGN 240 KCHFAHGAAE LHRYGGGLME TEARDSSSAP PDPKQGVLPK APGDTVVASV PSVPHSDVYH 300 VAVPSQRSTI VIQRAGQRTH QKWKGPDKIS RIYGDWIDDN E

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32360.1	1e-133	C3H family protein