PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022156476.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

MYB

Protein Properties

Length: 400aa MW: 43827.3 Da PI: 6.7414

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022156476.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.6	6e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W+++Ede+l+++++++G g+W+++++ g+ R++k+c++rw +yl XP_022156476.1 14 KGLWSPDEDEKLLNYITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYL 61 678*******************************************97 PP
2	Myb_DNA-binding	45.7	1.5e-14	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++++E++l++++++ lG++ W+ Ia+ ++ gRt++++k+ w++ XP_022156476.1 67 RGPFSQQEEDLIIELHAVLGNR-WSQIAAQLP-GRTDNEIKNLWNS 110 89******************.*****.*******9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence
MGRHSCCYKQ KLRKGLWSPD EDEKLLNYIT KHGHGCWSSV PKLAGLQRCG KSCRLRWINY 60 LRPDLKRGPF SQQEEDLIIE LHAVLGNRWS QIAAQLPGRT DNEIKNLWNS CIKKKLRQKG 120 IDPNTHKPVA EVDNESEKLA TTSHSSEEAT ITNATDQTPF FPIDPSIPNS MPSQQQLYSS 180 DHHSNITNSV PPPPLTQEFF LARFGTSSHD TTSSNRASEL VEYLSFQQLN YGSELATQNP 240 NPNSTPTSLC FNQNPNSNLI LPPTPLKSSS SSSSSIRHLA DRNHSAASCD INWEGTTFST 300 NTTGSSFDYQ RGGGGGGGNN NFFDGSNFTW GLPDCVANPY MIANAAAAVQ NEASQSVYVE 360 NMGGAAAETG FITEGGQQAS SDAVYNKHLH TLTVSFGHTL

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence

MGRHSCCYKQ KLRKGLWSPD EDEKLLNYIT KHGHGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGPF SQQEEDLIIE LHAVLGNRWS QIAAQLPGRT DNEIKNLWNS CIKKKLRQKG  120
IDPNTHKPVA EVDNESEKLA TTSHSSEEAT ITNATDQTPF FPIDPSIPNS MPSQQQLYSS  180
DHHSNITNSV PPPPLTQEFF LARFGTSSHD TTSSNRASEL VEYLSFQQLN YGSELATQNP  240
NPNSTPTSLC FNQNPNSNLI LPPTPLKSSS SSSSSIRHLA DRNHSAASCD INWEGTTFST  300
NTTGSSFDYQ RGGGGGGGNN NFFDGSNFTW GLPDCVANPY MIANAAAAVQ NEASQSVYVE  360
NMGGAAAETG FITEGGQQAS SDAVYNKHLH TLTVSFGHTL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09540.1	1e-89	MYB family protein