PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022153676.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

Trihelix

Protein Properties

Length: 525aa MW: 59446.3 Da PI: 6.6905

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022153676.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	85.8	5.3e-27	53	138	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW++ e+laL+++r++m+ +r++ k+plW+evs+k+ e gf+r+pk+Ckek+en+ k++k++keg+++++++s++ +++ d+le XP_022153676.1 53 RWPRPETLALLKIRSDMDAVFRDATHKAPLWDEVSRKLGELGFNRTPKKCKEKFENVYKYHKRTKEGRSGKSDNSKKVYRFSDELE 138 8*********************************************************************9999999999999987 PP
2	trihelix	104	1.1e-32	370	456	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgk.lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k ev aLi++r+eme ++++++ k+ lWee+s++mr g++rs+k+Ckekwen+nk++kk+k+++kkr +e+s+tcpyf+ql+a XP_022153676.1 370 RWPKTEVEALIRLRTEMEMKYQDQNgPKGLLWEEISAAMRGLGYNRSSKRCKEKWENINKYFKKVKDSNKKR-PEDSKTCPYFHQLDA 456 8*******************86438999*************************************8.99*********85 PP

Sequence ? help Back to Top
Protein Sequence Length: 525 aa Download sequence
MDGDSTLLAS SGEAAPPPAE AVEEEEAHDE AGGGGGGSNS GEEGDKNNYG GNRWPRPETL 60 ALLKIRSDMD AVFRDATHKA PLWDEVSRKL GELGFNRTPK KCKEKFENVY KYHKRTKEGR 120 SGKSDNSKKV YRFSDELEAF GNHHHHNHIS FQSHHHPAPA PPLPIPRPMT TTVTVTVPPY 180 NPPAKIVTST TVPSTMNNTT NNNSLPPKSS IPLSNLPKMA ANVMFSSSTS SSTASEEDPF 240 RSRRRKRRKR KWSDFFVRLT KEVIEKQEGL QLKFLEALER IENQRKLRDE AWRMKELTRV 300 NQEHEVLVQE MSVAAAKDAA VVAFLQKISP SPFPFSSPLP PQSQLQSGQL QNHDEKEKVT 360 TAVGNSPSSR WPKTEVEALI RLRTEMEMKY QDQNGPKGLL WEEISAAMRG LGYNRSSKRC 420 KEKWENINKY FKKVKDSNKK RPEDSKTCPY FHQLDALYKE KEKNTTFDIN SQMEPLMVEP 480 EQQWPPPPLQ PNQIMVNGEG IHEQEEEEEE EDDDDGGSSS TDVEN

Sequence ? help Back to Top

Protein Sequence Length: 525 aa Download sequence

MDGDSTLLAS SGEAAPPPAE AVEEEEAHDE AGGGGGGSNS GEEGDKNNYG GNRWPRPETL  60
ALLKIRSDMD AVFRDATHKA PLWDEVSRKL GELGFNRTPK KCKEKFENVY KYHKRTKEGR  120
SGKSDNSKKV YRFSDELEAF GNHHHHNHIS FQSHHHPAPA PPLPIPRPMT TTVTVTVPPY  180
NPPAKIVTST TVPSTMNNTT NNNSLPPKSS IPLSNLPKMA ANVMFSSSTS SSTASEEDPF  240
RSRRRKRRKR KWSDFFVRLT KEVIEKQEGL QLKFLEALER IENQRKLRDE AWRMKELTRV  300
NQEHEVLVQE MSVAAAKDAA VVAFLQKISP SPFPFSSPLP PQSQLQSGQL QNHDEKEKVT  360
TAVGNSPSSR WPKTEVEALI RLRTEMEMKY QDQNGPKGLL WEEISAAMRG LGYNRSSKRC  420
KEKWENINKY FKKVKDSNKK RPEDSKTCPY FHQLDALYKE KEKNTTFDIN SQMEPLMVEP  480
EQQWPPPPLQ PNQIMVNGEG IHEQEEEEEE EDDDDGGSSS TDVEN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	243	249	RRRKRRK
2	243	251	RRRKRRKRK
3	244	250	RRRKRRK
4	245	251	RRRKRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76890.2	3e-67	Trihelix family protein