PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022151888.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

SBP

Protein Properties

Length: 358aa MW: 40268.9 Da PI: 8.8797

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022151888.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	127.7	4.5e-40	169	245	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 CqvegC+ dls++k+y+r+h+vCe hsk+p+v++ gle+rfCqqCsrfh sefDe+krsCrrrL++hn+rrrk+q+ XP_022151888.1 169 CQVEGCNIDLSSVKDYYRKHRVCESHSKSPKVIIGGLERRFCQQCSRFHGTSEFDEKKRSCRRRLSNHNARRRKPQS 245 **************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence
MEWNARSPLQ WDWENLTVLN PRIAEQGDLF HSTNFQTKQV INFGSSGDDR RTGRPSFETG 60 QKSPESSKSV SINSLSIEES RTTKFTLEGF EATLEDIGDK NEFVEDEVAN TYAKPETSTC 120 SCEPMLSLKL GKQAYFEDSS AGNLTKPSFS MMASRATRKR CQNTTSPHCQ VEGCNIDLSS 180 VKDYYRKHRV CESHSKSPKV IIGGLERRFC QQCSRFHGTS EFDEKKRSCR RRLSNHNARR 240 RKPQSKVISL NPARLSSWDF ERQQIDIFSD KLSLIYPRPH ANSTWESTFS SRHSQRSKYV 300 LKPEKACGST GQLNVSGDEM SFMHAMPHHH SGKLAPSNGA ATKVLDAGSS TCSLSSVN

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence

MEWNARSPLQ WDWENLTVLN PRIAEQGDLF HSTNFQTKQV INFGSSGDDR RTGRPSFETG  60
QKSPESSKSV SINSLSIEES RTTKFTLEGF EATLEDIGDK NEFVEDEVAN TYAKPETSTC  120
SCEPMLSLKL GKQAYFEDSS AGNLTKPSFS MMASRATRKR CQNTTSPHCQ VEGCNIDLSS  180
VKDYYRKHRV CESHSKSPKV IIGGLERRFC QQCSRFHGTS EFDEKKRSCR RRLSNHNARR  240
RKPQSKVISL NPARLSSWDF ERQQIDIFSD KLSLIYPRPH ANSTWESTFS SRHSQRSKYV  300
LKPEKACGST GQLNVSGDEM SFMHAMPHHH SGKLAPSNGA ATKVLDAGSS TCSLSSVN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	225	242	KKRSCRRRLSNHNARRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43270.1	1e-46	SBP family protein