PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022151428.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

M-type_MADS

Protein Properties

Length: 376aa MW: 41260.9 Da PI: 5.414

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022151428.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	33.5	5.2e-11	11	51	3	43
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 i ++ r+ +f kRr g++KK +EL +LC++ + ++ +++ XP_022151428.1 11 IASDNARKASFKKRRLGLMKKVSELTTLCGVYAFAVVHGPD 51 678889**************************999999987 PP

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence
MTRKKVKLVW IASDNARKAS FKKRRLGLMK KVSELTTLCG VYAFAVVHGP DDDHPVIWPS 60 RSAAQQLYRR FQSLPEVERQ KKMTNQETYL KERTAKAQDQ LKKHIKKNQD LEMDLLMHQL 120 HQGRQIYQLS NAELLGLFWM VEEKMRDSRK RIEYHHQVHR LPPPCPGFSP SPLLQTGNDM 180 DLIDNTAGDG RNLMDQWFID MVMNSSDKIG GGSSSMAGEL GFQNEAIGNG FNCGGGNSNS 240 MIHVVGDLGG NATGCEAEGF GGGKLGEIAE DNNENLLSHW NFGGNHSSGG MSEIEKLVSN 300 INGGVDDQDT ASPMDLIGIG GDMSMGMYCD GGGAGGGSDA ELFXSLFGGS SSNENENEIE 360 TENDLLNKGW PNHFTP

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence

MTRKKVKLVW IASDNARKAS FKKRRLGLMK KVSELTTLCG VYAFAVVHGP DDDHPVIWPS  60
RSAAQQLYRR FQSLPEVERQ KKMTNQETYL KERTAKAQDQ LKKHIKKNQD LEMDLLMHQL  120
HQGRQIYQLS NAELLGLFWM VEEKMRDSRK RIEYHHQVHR LPPPCPGFSP SPLLQTGNDM  180
DLIDNTAGDG RNLMDQWFID MVMNSSDKIG GGSSSMAGEL GFQNEAIGNG FNCGGGNSNS  240
MIHVVGDLGG NATGCEAEGF GGGKLGEIAE DNNENLLSHW NFGGNHSSGG MSEIEKLVSN  300
INGGVDDQDT ASPMDLIGIG GDMSMGMYCD GGGAGGGSDA ELFXSLFGGS SSNENENEIE  360
TENDLLNKGW PNHFTP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	3	25	RKKVKLVWIASDNARKASFKKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48670.1	6e-37	M-type_MADS family protein