PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022147705.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

HRT-like

Protein Properties

Length: 501aa MW: 55816.3 Da PI: 9.7668

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022147705.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	52.9	6.2e-17	268	297	2	31
HRT-like 2 CGviledGsvCkrqPvkgRKRCeeHKGmRi 31 CGv+++ G vC+++Pv+gRKRC+eHKGmRi XP_022147705.1 268 CGVAIGYGEVCRKPPVEGRKRCAEHKGMRI 297 *****************************7 PP
2	HRT-like	58.9	8.3e-19	355	385	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGv l dGs+C+ Pv+gRKRCeeHKG+Ri XP_022147705.1 355 ICGVVLHDGSPCRSRPVQGRKRCEEHKGQRI 385 8*****************************7 PP
3	HRT-like	55.1	1.3e-17	449	479	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 +CGv l++G C+rqPvkgR RC eHKGmR+ XP_022147705.1 449 TCGVDLGNGLYCTRQPVKGRVRCGEHKGMRT 479 7*****************************5 PP

Sequence ? help Back to Top
Protein Sequence Length: 501 aa Download sequence
MGAEFFPARL KREDCKRTKH DSNFSKWEIL VAPSDWEDYS SGKEGAERYR IHNLPKVSSP 60 GLYELGIALC SSGLGREIAK LDADWIVAVY LGEADNVRTR LQHYGRSGSH LGNGYVCVDD 120 CKVIPLEKGP GLFQEMFSRG YSIVYRWAPM KNKRDAQMTE AQLLKTFDYA WNTSGNGARR 180 HNDVFKKLED IASRTTKFTV IARKLLPFRQ KRMGIKIKTS KVIPRANKPA DYPEERNNFF 240 SRILNFSRTR PRLVVDTDEV NGADSSSCGV AIGYGEVCRK PPVEGRKRCA EHKGMRINGS 300 LRNSSGRSIL QMYVDVRATK YGDKDFCGSN GENSCNTEEV SVSDSFPDTG NFLPICGVVL 360 HDGSPCRSRP VQGRKRCEEH KGQRIRRSTL TSSKGAKPKV LLNVIMSQDN HTASDYKQTS 420 SSISKPEPVL ITPGNSSEPS FDSPVFERTC GVDLGNGLYC TRQPVKGRVR CGEHKGMRTN 480 GLISKLARSV NPNVSDMGSV C

Sequence ? help Back to Top

Protein Sequence Length: 501 aa Download sequence

MGAEFFPARL KREDCKRTKH DSNFSKWEIL VAPSDWEDYS SGKEGAERYR IHNLPKVSSP  60
GLYELGIALC SSGLGREIAK LDADWIVAVY LGEADNVRTR LQHYGRSGSH LGNGYVCVDD  120
CKVIPLEKGP GLFQEMFSRG YSIVYRWAPM KNKRDAQMTE AQLLKTFDYA WNTSGNGARR  180
HNDVFKKLED IASRTTKFTV IARKLLPFRQ KRMGIKIKTS KVIPRANKPA DYPEERNNFF  240
SRILNFSRTR PRLVVDTDEV NGADSSSCGV AIGYGEVCRK PPVEGRKRCA EHKGMRINGS  300
LRNSSGRSIL QMYVDVRATK YGDKDFCGSN GENSCNTEEV SVSDSFPDTG NFLPICGVVL  360
HDGSPCRSRP VQGRKRCEEH KGQRIRRSTL TSSKGAKPKV LLNVIMSQDN HTASDYKQTS  420
SSISKPEPVL ITPGNSSEPS FDSPVFERTC GVDLGNGLYC TRQPVKGRVR CGEHKGMRTN  480
GLISKLARSV NPNVSDMGSV C

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	1e-113	HRT-like family protein