PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022145541.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

AP2

Protein Properties

Length: 505aa MW: 55449.9 Da PI: 6.5674

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022145541.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.6	5.7e-17	167	216	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g XP_022145541.1 167 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 216 78*****************......55**********************997 PP
2	AP2	42.7	1.4e-13	259	309	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+++ eAa+a+++a+++ +g XP_022145541.1 259 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEIEAARAYDKAALRCNG 309 89******.7**5553..2.26******99********99776 PP

Sequence ? help Back to Top
Protein Sequence Length: 505 aa Download sequence
MVFAEGGASN PMLDLNLEFV SSGSAFDSVE MVTGKMLQFP ANRMESTGSF NSSSVVNGDP 60 SASTTGDEDS SSNADEAFPY SFNAVQESLT AKSLSLSDDR RDQTMQLFPL TGGFSSGSSS 120 QKRWPEVSRP EYGYRGGVPE RGATVQPAQQ QHQPIRKNRR GPRSRSSQYR GVTFYRRTGR 180 WESHIWDCGK QVYLGGFDTA HAAARAYDRA AIKFRGIDAD INFNVSDYDE DIKQMSNFTK 240 EEFVHILRRH STGFSRGSSK YRGVTLHKCG RWEARMGQFL GKKYIYLGLF DSEIEAARAY 300 DKAALRCNGK EAVTNFEPSS YVAEMASETD AGEDNQILDL NLGIAPPNNL SDAQSESIDI 360 YGNGFHHGLH DFLVDRRATL ENSVSAAIRS SQAYGFAVPS DYHSSWNVSN SSFFPIARER 420 ATEMRNLGVG SWEWQIHSPP TASVPLFSAA ASSGFPFSSA SSSSSSSTAI VSPFSELHCP 480 AIFHHHASAP PISNGSNFSN FYCRS

Sequence ? help Back to Top

Protein Sequence Length: 505 aa Download sequence

MVFAEGGASN PMLDLNLEFV SSGSAFDSVE MVTGKMLQFP ANRMESTGSF NSSSVVNGDP  60
SASTTGDEDS SSNADEAFPY SFNAVQESLT AKSLSLSDDR RDQTMQLFPL TGGFSSGSSS  120
QKRWPEVSRP EYGYRGGVPE RGATVQPAQQ QHQPIRKNRR GPRSRSSQYR GVTFYRRTGR  180
WESHIWDCGK QVYLGGFDTA HAAARAYDRA AIKFRGIDAD INFNVSDYDE DIKQMSNFTK  240
EEFVHILRRH STGFSRGSSK YRGVTLHKCG RWEARMGQFL GKKYIYLGLF DSEIEAARAY  300
DKAALRCNGK EAVTNFEPSS YVAEMASETD AGEDNQILDL NLGIAPPNNL SDAQSESIDI  360
YGNGFHHGLH DFLVDRRATL ENSVSAAIRS SQAYGFAVPS DYHSSWNVSN SSFFPIARER  420
ATEMRNLGVG SWEWQIHSPP TASVPLFSAA ASSGFPFSSA SSSSSSSTAI VSPFSELHCP  480
AIFHHHASAP PISNGSNFSN FYCRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28550.3	1e-104	AP2 family protein