PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022142123.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

C3H

Protein Properties

Length: 592aa MW: 65260.3 Da PI: 8.7294

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022142123.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.6	3.3e-06	42	64	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++C+f+a+ G+C G++C F H XP_022142123.1 42 VAICDFYAK-GWCIKGSSCGFLHL 64 589****.***********5 PP

Sequence ? help Back to Top
Protein Sequence Length: 592 aa Download sequence
MSRIVLEPFL TIRISRSAAS KKRTRSLSPS AGVNIEDKHP AVAICDFYAK GWCIKGSSCG 60 FLHLKDKFDG SDEHSEEHTG GEYLKKQAQL NEGLQCSTDM LKSPVFHHPP DSSFLKQSSF 120 SLKFGLSSER TLQSDFTERQ GWDGLHETNK FLLNQREDSL LSTLPDCHKL PSTSFGPSYP 180 LSRGVSTSRN GLPPTFGLSS GSFMKLGVME EPANVACPRL QNDHLSPVSR TLNLNTTLPT 240 IGSLSSRSTT SNTSSFSFTS STSASLLGAQ KMSIIDREPR VFTTASSLMR SSSSFSPSES 300 DNSLTNAPMN SSEYKGKYSS NDWEPSIPFR PSFFIPSINT ASQYDPFLDS IEVPRIVGGS 360 YSVPLNRQGH EEVLTLCTLR KASGNFMVPG SSKPEFNDDA SSLSSRNKAE DKNDKNCYVH 420 GKDSLLLEAE MQGSSGVDGC NGSRISEAGH VGLTREKYVT KTKKKDTDSE LRLPNILLHE 480 KDSEADSDRQ LGDMDGKHLM DGNVHKESKA TRHFRSALIE LVKEILKPKW REGHLKKDVH 540 NTVVKKTLHK VLGTLQSHQV PTTVESVKLY LSSSRPKIEK LVEGYVSKYG KS

Sequence ? help Back to Top

Protein Sequence Length: 592 aa Download sequence

MSRIVLEPFL TIRISRSAAS KKRTRSLSPS AGVNIEDKHP AVAICDFYAK GWCIKGSSCG  60
FLHLKDKFDG SDEHSEEHTG GEYLKKQAQL NEGLQCSTDM LKSPVFHHPP DSSFLKQSSF  120
SLKFGLSSER TLQSDFTERQ GWDGLHETNK FLLNQREDSL LSTLPDCHKL PSTSFGPSYP  180
LSRGVSTSRN GLPPTFGLSS GSFMKLGVME EPANVACPRL QNDHLSPVSR TLNLNTTLPT  240
IGSLSSRSTT SNTSSFSFTS STSASLLGAQ KMSIIDREPR VFTTASSLMR SSSSFSPSES  300
DNSLTNAPMN SSEYKGKYSS NDWEPSIPFR PSFFIPSINT ASQYDPFLDS IEVPRIVGGS  360
YSVPLNRQGH EEVLTLCTLR KASGNFMVPG SSKPEFNDDA SSLSSRNKAE DKNDKNCYVH  420
GKDSLLLEAE MQGSSGVDGC NGSRISEAGH VGLTREKYVT KTKKKDTDSE LRLPNILLHE  480
KDSEADSDRQ LGDMDGKHLM DGNVHKESKA TRHFRSALIE LVKEILKPKW REGHLKKDVH  540
NTVVKKTLHK VLGTLQSHQV PTTVESVKLY LSSSRPKIEK LVEGYVSKYG KS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	3e-25	C3H family protein