PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022139252.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

NF-YC

Protein Properties

Length: 278aa MW: 30884.1 Da PI: 5.2769

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022139252.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	61.5	1.7e-19	6	86	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki++adedv +i+ +Pvl+ska elf+ +l r++ + + +t++ ++ +v++ +fdfl div r XP_022139252.1 6 DTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHLKHCVQSYSVFDFLRDIVSR 86 5789**************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence
MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCDRT YEITLQRGAK 60 TMNSLHLKHC VQSYSVFDFL RDIVSRVPDY GHGHSDGAVD DRKRRKPLGD EGNDFDELKK 120 SKMHDMSHSS GGRGRGRGRG RGRGRPARSA ERDNFQTNPD ADPCSSIENR NKNHPNPDVH 180 MDHHVEPSET SKEVGEANQP VQSFDLNADV IANGDSKTVV AAAAVSDTPV ESAGPTITES 240 ETKAADEFVD KMAIDPLQYA HLSSTRVEEE EEDYDEEE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	133	142	RGRGRGRGRG
2	133	143	RGRGRGRGRGR
3	135	144	RGRGRGRGRG
4	135	145	RGRGRGRGRGR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	8e-65	NF-YC family protein