PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022136962.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

HD-ZIP

Protein Properties

Length: 334aa MW: 37736.6 Da PI: 4.5004

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022136962.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.7	9.5e-19	60	113	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe ++++ e++ +LA++lgL+ rqV vWFqNrRa++k XP_022136962.1 60 KKRRLSVEQVKALEKNFEVENKLEPERKVKLARELGLQPRQVAVWFQNRRARWK 113 56689************************************************9 PP
2	HD-ZIP_I/II	128.1	3.6e-41	59	151	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekkrrls eqvk+LE++Fe e+kLeperKv+lareLglqprqvavWFqnrRAR+ktkqlE+dy +Lk++y++lk + e+L++++++L +e++e XP_022136962.1 59 EKKRRLSVEQVKALEKNFEVENKLEPERKVKLARELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKTNYEKLKLNYETLQQDNHALLKEIRE 151 69*************************************************************************************999986 PP

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence
MKRPTAGSSD SLGALMSICP TSDKEQSPRN NHVYGAEFQS MLDGFDEEGC VEESGHVSEK 60 KRRLSVEQVK ALEKNFEVEN KLEPERKVKL ARELGLQPRQ VAVWFQNRRA RWKTKQLERD 120 YGVLKTNYEK LKLNYETLQQ DNHALLKEIR ELKSKLQEDN SESNVSVEEE MVLAAADSEN 180 ALIEKTEPET GDFSVPPATE LKDLNYESFN NNGGEGEEVP TEEASLFPDF KDGSSDSDSS 240 AILNEDYSST AAISSPGVLQ NQHYHFMAAS PSPSPSAAVK FNCSTAALNY WQFQKAYQQT 300 QVYPKMEEHN FFTGEEGCCN FFSEEQAPSL HWWS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	60	89	KKRRLSVEQVKALEKNFEVENKLEPERKVK
2	108	116	RRARWKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22430.1	2e-72	HD-ZIP family protein