PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022136472.1
Organism
Momordica charantia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica
Family HD-ZIP
Protein Properties Length: 264aa    MW: 29439.3 Da    PI: 8.9268
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022136472.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.81.8e-18120174256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ ++++eq   Lee F++n++++ ++++ LA++l+L  rqV vWFqNrRa+ k
  XP_022136472.1 120 RKKLRLSREQSALLEESFKQNSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTK 174
                     678899***********************************************98 PP
2HD-ZIP_I/II123.78.9e-40120209191
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                     +kk+rls+eq++lLEesF+++++L+p++K++lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+ke +eL+ +l
  XP_022136472.1 120 RKKLRLSREQSALLEESFKQNSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQELK-AL 209
                     69*************************************************************************************9.55 PP
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    
MGFDDLSPTG LVLGLGLSEA SPKPAPDQHN LIKKPAPCSS SLDFDPCLTL GFSGESAYRK  60
IDDHHLYRQA SPHSSAVSSF SGGGGGRRVK RERDLSSEEV DLERVSSRIS DEDEDGSNTR  120
KKLRLSREQS ALLEESFKQN STLNPKQKQA LARQLNLRPR QVEVWFQNRR ARTKLKQTEV  180
DCEFLKKCCE TLTDENRRLQ KELQELKALK LAQPLYMHMP AATLTMCPSC ERVGGARDGA  240
SKAKFSMAPK PHFYNPFSNP SAAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1119125TRKKLRL
2169177RRARTKLKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.19e-89HD-ZIP family protein