PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022135436.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

AP2

Protein Properties

Length: 467aa MW: 51329.9 Da PI: 8.4327

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022135436.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	48.3	2.6e-15	122	181	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + g ++ ++++lg ++ +e+Aa+a++ a++k++g XP_022135436.1 122 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEEKAARAYDLAALKYWG 181 57*****************666664477446***********************98 PP
2	AP2	47.4	4.7e-15	224	275	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g XP_022135436.1 224 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 275 57**************988532...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 467 aa Download sequence
MNNNSTNNDN SCSQNWLPFS SLSHNSNLSL FHHHPTDLEI FTAAPKLEDF LRPSPPFHFS 60 AAAAFSQPCD SDLKTIAASF LRGDPPQQQH VLHHPHAPPP PLPDAPPPPP KKAVDSFGQR 120 TSIYRGVTRH RWTGRYEAHL WDNSCRREGQ SRKGRQVYLG GYDKEEKAAR AYDLAALKYW 180 GPTTTTNFPV SDYEKELEDM KNMTRQEFVA SLRRKSSGFS RGASIYRGVT RHHQHGRWQA 240 RIGRVAGNKD LYLGTFSTQE EAAEAYDIAA IKFRGLNAVT NFDISRYDVK SIASSNLPIG 300 GMSGSKSKTA SDSAASDSGG SRSTEERDHH SPASSTATLS FAVPIKQDPS DQYWSVLGYS 360 MGSFSTVVSK PDSIPVPSSS PFQQSPNPGP HMMLPAITNI SSNENEGGVY GGVYVQQPQP 420 QPQPQQQQYA TPIALSSGIS FEIGQSMRGL EAHSKASLFQ TPIFGME

Sequence ? help Back to Top

Protein Sequence Length: 467 aa Download sequence

MNNNSTNNDN SCSQNWLPFS SLSHNSNLSL FHHHPTDLEI FTAAPKLEDF LRPSPPFHFS  60
AAAAFSQPCD SDLKTIAASF LRGDPPQQQH VLHHPHAPPP PLPDAPPPPP KKAVDSFGQR  120
TSIYRGVTRH RWTGRYEAHL WDNSCRREGQ SRKGRQVYLG GYDKEEKAAR AYDLAALKYW  180
GPTTTTNFPV SDYEKELEDM KNMTRQEFVA SLRRKSSGFS RGASIYRGVT RHHQHGRWQA  240
RIGRVAGNKD LYLGTFSTQE EAAEAYDIAA IKFRGLNAVT NFDISRYDVK SIASSNLPIG  300
GMSGSKSKTA SDSAASDSGG SRSTEERDHH SPASSTATLS FAVPIKQDPS DQYWSVLGYS  360
MGSFSTVVSK PDSIPVPSSS PFQQSPNPGP HMMLPAITNI SSNENEGGVY GGVYVQQPQP  420
QPQPQQQQYA TPIALSSGIS FEIGQSMRGL EAHSKASLFQ TPIFGME

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57390.1	1e-130	AP2 family protein