PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022133068.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

C3H

Protein Properties

Length: 743aa MW: 82378.4 Da PI: 9.0949

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022133068.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.5	3.5e-06	102	121	6	26
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C f++ G C++G++Ck++H+ XP_022133068.1 102 CTEFMK-GRCHRGASCKYSHD 121 9***.***********6 PP
2	zf-CCCH	23.1	1.3e-07	162	183	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C+ffa+ GtC+ G +Ck++H XP_022133068.1 162 VICKFFAA-GTCRNGKNCKYSHH 183 589999.***********5 PP

Sequence ? help Back to Top
Protein Sequence Length: 743 aa Download sequence
MGRSRSRSWS RSRSRSRSPP HSFKRDSGFN DRNRNRSRVS TQSCRDFSSG RCRRGNGCQF 60 LHQDNQNLDD SWENRNRKGR SLRPTPHDFR DYPRSGRSAA HCTEFMKGRC HRGASCKYSH 120 DSAFHELSRG SPNDISRDRE NDRNKEAYFS RGEREPSSSS LVICKFFAAG TCRNGKNCKY 180 SHHSQPRVSP ERKSSTDRWE QVQCSDGRER LWDGSKSSEL ASGPNFAQLG EEKNEQIANQ 240 QPRYPWSSEQ KWSHGLNNES KSQWDQAVSI KAVQSNKNDA VLCKAEDGGG CIGTSDPRGH 300 GKWPSDDMEM SPDWHYPVQP SNPVVKGDCN IMQDSGSQTS IALATLSHAI AQEALVKKQD 360 IAIEPIIVDN THFRQNHNLT QDVTIASAFN DKITTDKNIA SHAEGTPSGK IIHGQRMVYH 420 TDHPGGNVMN LKVADGNFRV KSQDEDASIP TAIKSGTTIT PSIVTSEQIT QLTNLSVSLA 480 QYFGNVQPLP QLYASLNPHN VSETSSFPYS NAPVGALGAS MKSGPVIEGL KQHDPTLCNN 540 IELKKLEVTK TPSDCLLNPT GQKSAPDGKE EVQISNLPLT SGPGDKTGIS RKETLHESDV 600 INHGKPAAAG KAIKEKNDDG DFVNKTDLGV NENSQENDIT ENAKGNDGVN DKKKSKDAKG 660 IRAFKFELVE FVKELLKPTW KEGHISKDVY KTIVKKVVDK VTGTLQGGHI PQTQEKIDHY 720 LSFSKSKLTK LVQAYVDRVP KTT

Sequence ? help Back to Top

Protein Sequence Length: 743 aa Download sequence

MGRSRSRSWS RSRSRSRSPP HSFKRDSGFN DRNRNRSRVS TQSCRDFSSG RCRRGNGCQF  60
LHQDNQNLDD SWENRNRKGR SLRPTPHDFR DYPRSGRSAA HCTEFMKGRC HRGASCKYSH  120
DSAFHELSRG SPNDISRDRE NDRNKEAYFS RGEREPSSSS LVICKFFAAG TCRNGKNCKY  180
SHHSQPRVSP ERKSSTDRWE QVQCSDGRER LWDGSKSSEL ASGPNFAQLG EEKNEQIANQ  240
QPRYPWSSEQ KWSHGLNNES KSQWDQAVSI KAVQSNKNDA VLCKAEDGGG CIGTSDPRGH  300
GKWPSDDMEM SPDWHYPVQP SNPVVKGDCN IMQDSGSQTS IALATLSHAI AQEALVKKQD  360
IAIEPIIVDN THFRQNHNLT QDVTIASAFN DKITTDKNIA SHAEGTPSGK IIHGQRMVYH  420
TDHPGGNVMN LKVADGNFRV KSQDEDASIP TAIKSGTTIT PSIVTSEQIT QLTNLSVSLA  480
QYFGNVQPLP QLYASLNPHN VSETSSFPYS NAPVGALGAS MKSGPVIEGL KQHDPTLCNN  540
IELKKLEVTK TPSDCLLNPT GQKSAPDGKE EVQISNLPLT SGPGDKTGIS RKETLHESDV  600
INHGKPAAAG KAIKEKNDDG DFVNKTDLGV NENSQENDIT ENAKGNDGVN DKKKSKDAKG  660
IRAFKFELVE FVKELLKPTW KEGHISKDVY KTIVKKVVDK VTGTLQGGHI PQTQEKIDHY  720
LSFSKSKLTK LVQAYVDRVP KTT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	5e-10	C3H family protein