PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_022132271.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica
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Family | ARF | ||||||||
Protein Properties | Length: 545aa MW: 59322.4 Da PI: 6.8876 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 72.8 | 4.3e-23 | 104 | 205 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f k+lt+sd+++ g +++p+ +a+++ ++ + tl+++d +g +W++++i+r++++r++lt+GW++Fv+ ++L +gD+vvF ++s XP_022132271.1 104 FAKILTSSDANNGGGFSVPRFCADSIfpplnylADPPVQ--TLSITDVHGVVWNFRHIFRGTPRRHLLTTGWSKFVNNKKLVAGDSVVFA--KNS 194 89*********************999*****98666666..8************************************************..779 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 ++ ++v+++r+ XP_022132271.1 195 RGDMFVGIRRA 205 9999*****97 PP | |||||||
2 | Auxin_resp | 92 | 9.8e-31 | 257 | 340 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ a++ +FevvY+Pra++seFvvk+e v kal+ +s G R+kma++tedss++++ +Gtv++vs + W+nS+Wr+L+ XP_022132271.1 257 AAELAAQFRPFEVVYYPRAGWSEFVVKAETVDKALSYYWSSGLRVKMAVDTEDSSKTTWyQGTVTSVSIPEHGPWRNSPWRMLQ 340 67889999***************************************************9**********************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 545 aa Download sequence |
MDPKLWRAFA GNSVQIHTVG SQVYYFTQGH VEQSSSAPCL SRSVLSNPAT KCLVTAAHFN 60 ADPLTDEVCI KLNLHPFGHG GEVPVLPLAG SDDNGGEGDR VVSFAKILTS SDANNGGGFS 120 VPRFCADSIF PPLNYLADPP VQTLSITDVH GVVWNFRHIF RGTPRRHLLT TGWSKFVNNK 180 KLVAGDSVVF AKNSRGDMFV GIRRATKGNT GGDCGRWHSQ IGGVRYSAEE NRSGEGGREV 240 FSRNGIGKLP AEAVANAAEL AAQFRPFEVV YYPRAGWSEF VVKAETVDKA LSYYWSSGLR 300 VKMAVDTEDS SKTTWYQGTV TSVSIPEHGP WRNSPWRMLQ VTWDETDALL SAKGVNPWEV 360 EFATAAAPVQ PTVHQAKKFR GLQKSGQLTG EEELFSPMMR FGDSSTVEQF NQSLLSFNSF 420 PAGMQGARQN LFCESRLSNS YKEITSLTCD DNSMCKMNVV PKKQMVSTDL LIGSVQSDTL 480 SPDSQASVLS FAAEATENQC CNSTKSGVRS FQLFGQVIYT NLPAENGLNS GVSTNDGDKN 540 PNQST |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77850.1 | 1e-142 | ARF family protein |